DY258405

Overview
NameDY258405
Unique NameDY258405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1274
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 3.442e-61
Identity = 123/211 (58.29%), Postives = 148/211 (70.14%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ--GLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGDVK-EAGHEHGRGSGMGILKGLVMG 874
            CRDD+AAF LKFVAIASIL++G  GV IPLIG++RRFL+TDG+LFV  KAFAAGVILATGFVHML+GG+EAL NPCLP+FPWSKFPFPGFFAM+A+L+TL +DF+GTQYYERKQ    + + E  GR     E S   +VP++     + KVFGEE+ GG+HIVG+                 CEG  K + GH H  G G G   G V G
Sbjct:   18 CRDDSAAFLLKFVAIASILLAGAAGVTIPLIGRNRRFLQTDGNLFVTAKAFAAGVILATGFVHMLAGGTEALKNPCLPDFPWSKFPFPGFFAMIAALITLFVDFMGTQYYERKQEREASESVEPFGR-----EQSPGIVVPMIGEGTNDGKVFGEEDSGGIHIVGIHAHAAHHRHSHPPGHDSCEGHSKIDIGHAHAHGHGHGHGHGHVHG 223          

HSP 2 Score: 25.409 bits (54), Expect = 3.442e-61
Identity = 16/39 (41.03%), Postives = 19/39 (48.72%), Query Frame = 3
Query:  936 HSNYLGKSLEIPPVPGK-KNLETAFSFLNFFEDLPLGRC 1049
            HS  +G SL +   P   + L  A SF  FFE   LG C
Sbjct:  247 HSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGC 285          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 5.854e-61
Identity = 119/198 (60.10%), Postives = 144/198 (72.73%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGDVKEAGHEHGRGSG 844
            CRDD+AAF LKFVAIASIL++G  GVAIPLIG++RRFL+T+G+LFVA KAFAAGVILATGFVHML+GG+EAL NPCLP+FPWSKFPFPGFFAMVA+L TLL+DF+GTQYYERKQ   +A  E     +     +  +VPV+  +  + KVFGEE+GGG+HIVG+                 C+G     GH HG   G
Sbjct:   18 CRDDSAAFLLKFVAIASILLAGAAGVAIPLIGRNRRFLQTEGNLFVAAKAFAAGVILATGFVHMLAGGTEALSNPCLPDFPWSKFPFPGFFAMVAALATLLVDFMGTQYYERKQERNQAATE-----AAAGSEEIAVVPVVGERVTDNKVFGEEDGGGIHIVGIRAHAAHHRHSHSNSHGTCDGHAH--GHSHGHMHG 208          

HSP 2 Score: 25.409 bits (54), Expect = 5.854e-61
Identity = 16/39 (41.03%), Postives = 19/39 (48.72%), Query Frame = 3
Query:  936 HSNYLGKSLEIPPVPGK-KNLETAFSFLNFFEDLPLGRC 1049
            HS  +G SL +   P   + L  A SF  FFE   LG C
Sbjct:  232 HSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGC 270          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.531e-37
Identity = 102/218 (46.79%), Postives = 126/218 (57.80%), Query Frame = 2
Query:  293 IASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQG--LTRATEEQGRVRSV--DEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGDVKE---AGHEHGRGSGMGILKGLVMGNEESGVPPVPLSRFWKL 925
            +ASILISG  GV+IPL+G     L  +G L    KAFAAGVILATGFVHMLSGGS+AL +PCLPEFPW  FPFP FFAMVA+LLTLL DF+ T YYERKQ   + ++ E  G   SV  D   +SG      ++D       +E+GG +HIVGM                  E   K    +GH HG   G G + GL     +SGV  V +S+  ++
Sbjct:    1 MASILISGAAGVSIPLVGT---LLPLNGGLMRGAKAFAAGVILATGFVHMLSGGSKALSDPCLPEFPWKMFPFPEFFAMVAALLTLLADFMITGYYERKQEKMMNQSVESLGTQVSVMSDPGLESGF-----LRD-------QEDGGALHIVGMRAHAEHHRHSLSMGAEGFEALSKRSGVSGHGHGHSHGHGDV-GL-----DSGVRHVVVSQILEM 197          

HSP 2 Score: 24.2534 bits (51), Expect = 8.531e-37
Identity = 16/39 (41.03%), Postives = 19/39 (48.72%), Query Frame = 3
Query:  936 HSNYLGKSLEIPPVPGK-KNLETAFSFLNFFEDLPLGRC 1049
            HS  +G SL +   P   + L  A SF  FFE   LG C
Sbjct:  202 HSIIIGISLGVSHSPCTIRPLLLALSFHQFFEGFALGGC 240          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.985e-25
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  245 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERK 589
            + C D   A  LK VAI +IL++ ++GVA PL  ++  FL  DG +F+  K FA+G+IL TGF+H+L    E L +PCL + PW KFPF GF AM++ L+TL +D + T  Y +K
Sbjct:   39 DSCIDKTKALPLKIVAIVAILVTSMIGVAAPLFSRYVTFLHPDGKIFMIIKCFASGIILGTGFMHVLPDSFEMLSSPCLEDNPWHKFPFTGFVAMLSGLVTLAIDSIATSLYTKK 153          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.130e-23
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGL 598
            C + A A  LK +AI  ILI+ ++GV  PL  ++  FL+ DG++F   K FA+G+IL TGF+H+L    E L + CL E PW KFPF GF AM++ L+TL +D + T  Y  K  +
Sbjct:   34 CVNKAKALPLKVIAIFVILIASMIGVGAPLFSRNVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEENPWHKFPFSGFLAMLSGLITLAIDSMATSLYTSKNAV 149          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.811e-22
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQ 619
            C + A A  LK VAI +IL + ++GV  PL  ++  FL+ DG+ F+  K F++G+IL TGF+H+L    E L + CL + PW KFPF GF AM++ L+TL +D + T  Y  K  +    +E+
Sbjct:   37 CINKAKALPLKIVAIVAILTTSLIGVTSPLFSRYISFLRPDGNGFMIVKCFSSGIILGTGFMHVLPDSFEMLSSKCLSDNPWHKFPFAGFVAMMSGLVTLAIDSITTSLYTGKNSVGPVPDEE 159          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.365e-22
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 2
Query:  245 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYER 586
            +D  + A A   K  AI S+L +G++GV  PL+GK    LK + + F  TKAFAAGVILATGF+H+L  G E L +PCL    W +FPF GF AMVA++LTL +D   T Y+ +
Sbjct:   37 DDEANKAGAKKYKIAAIPSVLAAGVIGVMFPLLGKFFPSLKPETTFFFVTKAFAAGVILATGFMHVLPEGYEKLTSPCLKGEAW-EFPFTGFIAMVAAILTLSVDSFATSYFHK 149          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.270e-22
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  269 AFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPV 670
            A  LK  +IA +L++G VGV++PLIGK    L+ +  +F   KAFAAGVIL TGFVH+L    E L +PCL +    KFPF GF AM++++ TL++D   T YY+R+        +Q  V  VDE+  +G V +
Sbjct:   47 ATKLKLGSIALLLVAGGVGVSLPLIGKRIPALQPENDIFFMVKAFAAGVILCTGFVHILPDAFERLSSPCLEDTTAGKFPFAGFVAMLSAMGTLMIDTFATGYYKRQHFSNNHGSKQVNV-VVDEEEHAGHVHI 179          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.609e-21
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  245 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQ--YYERKQGLTRATEEQGRVRSVDED 646
            +D  + A A   K  AI ++LI+GI+GV  PL+GK    L+ +   F  TKAFAAGVILATGF+H+L    E L++PCL    W +FPF GF AM+A++LTL +D   T   Y    +   R ++ +    SVD +
Sbjct:   42 DDHENKAGARKYKIAAIPTVLIAGIIGVLFPLLGKVFPSLRPETCFFFVTKAFAAGVILATGFMHVLPEAYEMLNSPCLTSEAW-EFPFTGFIAMIAAILTLSVDTFATSSFYKSHCKASKRVSDGETGESSVDSE 176          
BLAST of DY258405 vs. ExPASy Swiss-Prot
Match: ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 4.932e-20
Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDED 646
            C D   A +LK ++I SILI+ ++GV +P   +     + + S F+  K+FA+G+IL+TGF+H+L    E L +PCL + PW KFPF GF AM++++ TL++D + T  +  K G      +   V + D++
Sbjct:   42 CIDKNKALDLKLLSIFSILITSLIGVCLPFFARSIPAFQPEKSHFLIVKSFASGIILSTGFMHVLPDSFEMLSSPCLNDNPWHKFPFAGFVAMMSAVFTLMVDSITTSVF-TKSGRKDLRADVASVETPDQE 172          
The following BLAST results are available for this feature:
BLAST of DY258405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
IRT3_ARATH3.442e-6158.29Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP4_ARATH5.854e-6160.10Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
ZIP9_ARATH8.531e-3746.79Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
ZIP8_ARATH2.985e-2546.09Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
IRT1_ARATH8.130e-2344.83Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
IRT2_ARATH1.811e-2241.46Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]
ZIP5_ARATH2.365e-2249.12Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
ZIP1_ARATH5.270e-2244.03Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP3_ARATH7.609e-2142.65Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP10_ARATH4.932e-2037.12Probable zinc transporter 10 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD07FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258405 ID=DY258405; Name=DY258405; organism=Citrus clementina; type=EST; length=1274bp
CGACGGGGCCCGATTCCTTCTCGTGCTTGCTGATTAAACCCCATCACCAT
CTTCCATACTAATTATTAAAAAAAAAAAAAAAGCTTTTCAGAATCTCGTT
TCTCTTGCCATGTCATTCATCGAGGATCTCTGGGGATTGCGTTTTTTCGA
TCATTTTAGATCAAAGACGAAAGCTTTTTCCGGTTCCTTTTTGCATGCGG
TTTCTGATTCGATGATGAAGTCGAGCTGCGAGTCCTCGGACCGCGAAGAC
TGCCGTGACGACGCGGCGGCCTTTAATCTCAAATTCGTCGCCATAGCCTC
CATCCTCATTTCCGGAATCGTCGGCGTCGCCATTCCGTTAATTGGGAAGC
ACCGCCGGTTCTTAAAAACCGACGGCAGTCTGTTCGTCGCTACTAAAGCG
TTTGCGGCCGGTGTCATTTTGGCTACGGGTTTTGTTCACATGTTATCTGG
AGGATCCGAGGCGTTGGATAACCCGTGTTTGCCCGAATTCCCGTGGTCCA
AGTTCCCGTTCCCTGGGTTTTTCGCCATGGTGGCTTCGCTTCTGACGCTG
CTTCTGGACTTCGTGGGGACACAATATTACGAGAGGAAACAGGGCCTGAC
CCGGGCTACCGAGGAGCAGGGTCGGGTCCGGTCAGTGGATGAGGACTCGG
ATTCGGGTATTGTCCCGGTTCTGGAAATTAAGGACCGGAACGTGAAGGTC
TTCGGTGAGGAGGAAGGTGGAGGCATGCACATTGTGGGGATGCATGCACA
CGCGGCTCACCATAGACATAATCATCCTCATGGGCAACACGCATGTGAGG
GGGACGTGAAGGAGGCTGGCCATGAACACGGCAGGGGCTCCGGGATGGGC
ATTCTCAAGGGTTTAGTGATGGGGAATGAAGAAAGCGGGGTTCCGCCCGT
CCCCCTTTCCCGGTTTTGGAAATTGGAATTGTTTCCACTCCAATTACCTT
GGGAAATCCCTTGAAATTCCCCCCGTCCCTGGAAAAAAGAACCTTGAAAC
AGCCTTTTCCTTCCTTAATTTTTTTGAAGATTTGCCCTTGGGAAGGTGCC
CCCCCCAGCCCTAATTCAAAAACCCACCCCCCCCGTTAAAGGGGGGGTTT
TTTCCCCCCTTAAAACCCCCAGAAGGGAAACACCCCCCGAACCTCGCCCC
TCGCCTTCTATTTTAAACCCCAAAACGCCCCCCGGGGCGTCTCGTAAATG
GTTGAAAAGAAAATCTTAAAAATATTTTGGGGCGCCCCCCGCGCCCCTTT
TCGTCGGGGGGTGAATAAGGGGGG
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