DY259903

Overview
NameDY259903
Unique NameDY259903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.929e-33
Identity = 62/113 (54.87%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGI 429
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N+ PPT+A M  +Y+E+ +ED FLY+ Y  E+ +G+
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 6.929e-33
Identity = 62/113 (54.87%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGI 429
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N+ PPT+A M  +Y+E+ +ED FLY+ Y  E+ +G+
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 9.050e-33
Identity = 64/112 (57.14%), Postives = 86/112 (76.79%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK +H LE R  E+A+IR KYPDR+PVIVE+   S + +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV    P ++  M  +YE+ +DEDGFLY+ Y GENTFG
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 9.050e-33
Identity = 64/112 (57.14%), Postives = 86/112 (76.79%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK +H LE R  E+A+IR KYPDR+PVIVE+   S + +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV    P ++  M  +YE+ +DEDGFLY+ Y GENTFG
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 9.050e-33
Identity = 64/112 (57.14%), Postives = 86/112 (76.79%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK +H LE R  E+A+IR KYPDR+PVIVE+   S + +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV    P ++  M  +YE+ +DEDGFLY+ Y GENTFG
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 9.050e-33
Identity = 64/112 (57.14%), Postives = 86/112 (76.79%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK +H LE R  E+A+IR KYPDR+PVIVE+   S + +IDK+KYLVP+D+TV QF++++RKRI+L  EKAIF+FV    P ++  M  +YE+ +DEDGFLY+ Y GENTFG
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.966e-31
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K  +K  HP E R+ E  +IR KYPDR+P+IVE+A K+ VP++D++KYLVP+DLT GQF  ++RKRI L PE A+F FV N  PPT+A M  +YE++ +ED FLY+ Y  E+ +G
Sbjct:    2 KFQYKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.445e-30
Identity = 62/115 (53.91%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K ++K E+  E+R+AE  +IR KYPDRIPVIVE+A KS + ++DKKKYLVP+DLTVGQF +++RKRI+L PE A+F FV N+ P T   M  +Y+++ +ED FLY+ Y  E+ +G
Sbjct:    2 KWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.219e-30
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 1
Query:   88 SFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            SFK ++ L+ R AE+  I  KYP RIPVI E+  K+D+P I+KKK+LVP D++VGQF+Y++  R+ LSP KA+F+FV N  P TAA+M ++YE  +D+DGF+YM Y  E TFG
Sbjct:    3 SFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 2.307e-28
Identity = 60/118 (50.85%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDE-DGFLYMTYRGENTFG 426
            M    FK E  LE R  E+A +   YPDRIPVIVE+  +S++PE++K+KYLVP ++ VGQF++++R R+ LSP  A+F+FV N  P TA +M ++YE  +DE DGFLY+ Y  E TFG
Sbjct:    1 MKPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
The following BLAST results are available for this feature:
BLAST of DY259903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRAP_HUMAN6.929e-3354.87Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN6.929e-3354.87Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_RAT9.050e-3357.14Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_MOUSE9.050e-3357.14Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN9.050e-3357.14Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN9.050e-3357.14Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL3_HUMAN4.966e-3153.04Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL1.445e-3053.91Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
ATG8I_ARATH3.219e-3053.98Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
ATG8D_ORYSJ2.307e-2850.85Autophagy-related protein 8D OS=Oryza sativa subsp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YJ04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259903 ID=DY259903; Name=DY259903; organism=Citrus clementina; type=EST; length=1079bp
CGACCTTGCCTGCTTTTGTTGCTTATCAATTTTGCGATCTCAGCTACATT
TCTCTCTGAAACGGAAAGCACGCTCATGGCGAAAAATTCTTTTAAGCTAG
AACACCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGACAAG
TATCCAGACAGAATCCCAGTGATTGTGGAGAGGGCCGAAAAAAGTGATGT
ACCTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTG
GCCAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAG
GCTATTTTCATTTTTGTGAAAAACATTCCGCCACCCACTGCGGCAATGAT
GTCTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGA
CCTACCGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCACGCTA
CTATCTATGTGAACAATGCTTCAAGAACTTAGGTGAAAAAGGGGTTAAGT
TGTAAATAGTTCTATGTTCCCATTAGTTTGGAATTTCTTTCAGTTAATGG
AATTATATGTACCAACCCAACAATTTGGGAACCACCAACATATCACAAAA
AAATCCATACTTCTCCCCAAGGCCATCCGCCTGCACCAAAAGAAAAAAAA
CAACAAAACCCACTCCCTCCTGCAACACTTTTGGGCATCTTTAAAGAACG
CCATCGGTTCATAAACTTTCCTGTATCAACTCGGCCCTTAATCCTTCCCA
ATTATATCCTCCTCTTTGCCGCCCCCCCTGATTCCCCCTCTTATTAGGGC
GCGTCAATACCGGGGGAAGATGACGCTCTACCCCCACCAACCCCCGCCCC
CGCGCCCCCCCAACACCACCACACCCGCCCTTCGCCCAACCCCTCCAATC
ACTACCCAACAGACACACAATACCACCCACAAACACATAACACTGAACAC
TTGTCTCTTCCACCTATTTCTTACCGCATCATCTCGCCCCTACCCCATCT
CTGTCAAACTCATTCAAGCTCCCCACTCCAACATGCGTAACAAAACATAC
TATTACTCACAAACCACCTCACAAAACTA
back to top