DY259903

Overview
NameDY259903
Unique NameDY259903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 6.441e-55
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGIF 432
            MA +SFK EHPLE+RQAEAARIR+KYPDRIPVIVERAEKSDVP+ID+KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNI PPTAA+MSAIYEE++DEDGFLYM+Y GENTFGIF
Sbjct:    1 MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFGIF 119
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 6.441e-55
Identity = 104/119 (87.39%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGIF 432
            MA++SFKLEHPLERRQAEA RIR+KYPDRIPVIVE+AE+SD+P+IDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIFIFVKN  PPTAA+MSAIYEEN+DEDGFLYMTY GENTFG+F
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLF 119
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 6.441e-55
Identity = 104/119 (87.39%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGIF 432
            MA++SFKLEHPLERRQAEA RIR+KYPDRIPVIVE+AE+SD+P+IDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIFIFVKN  PPTAA+MSAIYEEN+DEDGFLYMTY GENTFG+F
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLF 119
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 7.121e-54
Identity = 102/117 (87.18%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            MA+ SFKLEHPLERRQAE+ARIR+KY DRIPVIVE+A+K+DVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIF+FVKN  PPTA++MSAIYEEN+DEDGFLYMTY GENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 7.121e-54
Identity = 102/117 (87.18%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            MA+ SFKLEHPLERRQAE+ARIR+KY DRIPVIVE+A+K+DVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIF+FVKN  PPTA++MSAIYEEN+DEDGFLYMTY GENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.586e-53
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGI 429
            MA +SFKLEHPLERRQ E++RIR+KYPDRIPVIVERAE+SDVP IDKKKYLVPADLTVGQFVYVVRKRIKLS EKAIF+FVKN  PPTAAMMSAIY+EN+DEDGFLYMTY GENTFG+
Sbjct:    1 MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFGL 118
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 2.706e-53
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGI 429
            MAK+SFKL+H LERRQAEA RIR+KY DRIPVIVE+AE+SD+P+IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN  PPTAA+MSAIYEEN+DEDGFLYMTY GENTFG+
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGL 118
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.706e-53
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGI 429
            MAK+SFKL+H LERRQAEA RIR+KY DRIPVIVE+AE+SD+P+IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN  PPTAA+MSAIYEEN+DEDGFLYMTY GENTFG+
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGL 118
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.096e-49
Identity = 93/117 (79.49%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            MAK+SFK EH LE+R+AEAARIR+KYPDRIPVIVE+AEKSD+P IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+ PP  A+MS++YEE +D+DGFLY+TY GENTFG
Sbjct:    1 MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117
[Close]
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 4.044e-49
Identity = 94/117 (80.34%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            MAK+SFK+ +PLE R +E++RIR+KYPDRIPVIVE+A +SDVP+IDKKKYLVPADLTVGQFVYVVRKRIKL  EKAIF+FVKN  PPTAA+MSAIYEE++DEDGFLYMTY GENTFG
Sbjct:    1 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117
The following BLAST results are available for this feature:
BLAST of DY259903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8D_ARATH6.441e-5589.08Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8C_ORYSJ6.441e-5587.39Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI6.441e-5587.39Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8A_ORYSJ7.121e-5487.18Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI7.121e-5487.18Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8C_ARATH1.586e-5386.44Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ2.706e-5386.44Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI2.706e-5386.44Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8F_ARATH3.096e-4979.49Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8A_ARATH4.044e-4980.34Autophagy-related protein 8a OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YJ04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259903 ID=DY259903; Name=DY259903; organism=Citrus clementina; type=EST; length=1079bp
CGACCTTGCCTGCTTTTGTTGCTTATCAATTTTGCGATCTCAGCTACATT
TCTCTCTGAAACGGAAAGCACGCTCATGGCGAAAAATTCTTTTAAGCTAG
AACACCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGACAAG
TATCCAGACAGAATCCCAGTGATTGTGGAGAGGGCCGAAAAAAGTGATGT
ACCTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTG
GCCAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAG
GCTATTTTCATTTTTGTGAAAAACATTCCGCCACCCACTGCGGCAATGAT
GTCTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGA
CCTACCGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCACGCTA
CTATCTATGTGAACAATGCTTCAAGAACTTAGGTGAAAAAGGGGTTAAGT
TGTAAATAGTTCTATGTTCCCATTAGTTTGGAATTTCTTTCAGTTAATGG
AATTATATGTACCAACCCAACAATTTGGGAACCACCAACATATCACAAAA
AAATCCATACTTCTCCCCAAGGCCATCCGCCTGCACCAAAAGAAAAAAAA
CAACAAAACCCACTCCCTCCTGCAACACTTTTGGGCATCTTTAAAGAACG
CCATCGGTTCATAAACTTTCCTGTATCAACTCGGCCCTTAATCCTTCCCA
ATTATATCCTCCTCTTTGCCGCCCCCCCTGATTCCCCCTCTTATTAGGGC
GCGTCAATACCGGGGGAAGATGACGCTCTACCCCCACCAACCCCCGCCCC
CGCGCCCCCCCAACACCACCACACCCGCCCTTCGCCCAACCCCTCCAATC
ACTACCCAACAGACACACAATACCACCCACAAACACATAACACTGAACAC
TTGTCTCTTCCACCTATTTCTTACCGCATCATCTCGCCCCTACCCCATCT
CTGTCAAACTCATTCAAGCTCCCCACTCCAACATGCGTAACAAAACATAC
TATTACTCACAAACCACCTCACAAAACTA
back to top