DY259903

Overview
NameDY259903
Unique NameDY259903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.145e-27
Identity = 59/121 (48.76%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   76 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLS---PEKAIFIFV-KNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            +   SFK E+ LE+R+  +++IR++Y DR+P+IVERA  SDVP+I+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN  PP++ ++S+IY+ ++DEDGFLY+ Y GENTFG
Sbjct:    3 LLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.331e-27
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   88 SFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            SFK +   + R  E+  I  KYPDRIPVI+E+   +D+P+++K KYLVP D+TVG F++++ KR++L P KA+F+FV N  P TA+ M ++Y   ++EDGFLYM Y  E TFG
Sbjct:    7 SFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.360e-19
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSD-VPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIP-PPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK    L  RQ E A IR K+P++IPV+VER  +   +P +DK K+LVP +LT+ QF+ ++R R+ L   +A ++ V N      +A M+ IY + +DEDGF+YMTY  + TFG
Sbjct:   13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.403e-17
Identity = 44/115 (38.26%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   88 SFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAM-MSAIYEENRDEDGFLYMTYRGENTFG 426
            SFK   P   RQ +   IR + P+++PVI+ER + +  +P +D+ K+LVP  +TV + + +VR+R++L P++A F+ V      + +M MS +Y + RD DGF+YM Y  +  FG
Sbjct:   16 SFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.832e-17
Identity = 44/114 (38.60%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK       R  E  +IRD++P +IPVI+ER + +  +P +DK K+LVP  + + + V ++R+R++L+P +A F+ V ++     +  ++ IYE+ +DEDGFLYM Y  + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.832e-17
Identity = 44/114 (38.60%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK       R  E  +IRD++P +IPVI+ER + +  +P +DK K+LVP  + + + V ++R+R++L+P +A F+ V ++     +  ++ IYE+ +DEDGFLYM Y  + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.832e-17
Identity = 44/114 (38.60%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK       R  E  +IRD++P +IPVI+ER + +  +P +DK K+LVP  + + + V ++R+R++L+P +A F+ V ++     +  ++ IYE+ +DEDGFLYM Y  + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 4.081e-17
Identity = 42/118 (35.59%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   79 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAM-MSAIYEENRDEDGFLYMTYRGENTFG 426
            ++ +FK     E+R  +   IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + + ++R+R++L+  +A F+ V      + +  +S +YE  RDEDGFLYM Y  + TFG
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 4.081e-17
Identity = 42/118 (35.59%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   79 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAM-MSAIYEENRDEDGFLYMTYRGENTFG 426
            ++ +FK     E+R  +   IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + + ++R+R++L+  +A F+ V      + +  +S +YE  RDEDGFLYM Y  + TFG
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 5.330e-17
Identity = 43/123 (34.96%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   79 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAM-MSAIYEENRDEDGFLYMTYRGENTFGIF*SV 441
            ++ +FK     E+R  +   IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + + ++R+R++L+  +A F+ V      + +  +S +YE  +DEDGFLYM Y  + TFG+  SV
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKLSV 125          
The following BLAST results are available for this feature:
BLAST of DY259903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8L_DICDI1.145e-2748.76Autophagy-related protein 8-like protein DDB_G0290... [more]
ATG8H_ARATH3.331e-2749.56Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
MLP3C_HUMAN4.360e-1943.86Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL1.403e-1738.26Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]
MLP3A_RAT1.832e-1738.60Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_MOUSE1.832e-1738.60Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN1.832e-1738.60Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT4.081e-1735.59Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE4.081e-1735.59Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN5.330e-1734.96Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259903 ID=DY259903; Name=DY259903; organism=Citrus clementina; type=EST; length=1079bp
CGACCTTGCCTGCTTTTGTTGCTTATCAATTTTGCGATCTCAGCTACATT
TCTCTCTGAAACGGAAAGCACGCTCATGGCGAAAAATTCTTTTAAGCTAG
AACACCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGACAAG
TATCCAGACAGAATCCCAGTGATTGTGGAGAGGGCCGAAAAAAGTGATGT
ACCTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTG
GCCAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAG
GCTATTTTCATTTTTGTGAAAAACATTCCGCCACCCACTGCGGCAATGAT
GTCTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGA
CCTACCGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCACGCTA
CTATCTATGTGAACAATGCTTCAAGAACTTAGGTGAAAAAGGGGTTAAGT
TGTAAATAGTTCTATGTTCCCATTAGTTTGGAATTTCTTTCAGTTAATGG
AATTATATGTACCAACCCAACAATTTGGGAACCACCAACATATCACAAAA
AAATCCATACTTCTCCCCAAGGCCATCCGCCTGCACCAAAAGAAAAAAAA
CAACAAAACCCACTCCCTCCTGCAACACTTTTGGGCATCTTTAAAGAACG
CCATCGGTTCATAAACTTTCCTGTATCAACTCGGCCCTTAATCCTTCCCA
ATTATATCCTCCTCTTTGCCGCCCCCCCTGATTCCCCCTCTTATTAGGGC
GCGTCAATACCGGGGGAAGATGACGCTCTACCCCCACCAACCCCCGCCCC
CGCGCCCCCCCAACACCACCACACCCGCCCTTCGCCCAACCCCTCCAATC
ACTACCCAACAGACACACAATACCACCCACAAACACATAACACTGAACAC
TTGTCTCTTCCACCTATTTCTTACCGCATCATCTCGCCCCTACCCCATCT
CTGTCAAACTCATTCAAGCTCCCCACTCCAACATGCGTAACAAAACATAC
TATTACTCACAAACCACCTCACAAAACTA
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