DY262806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 3.477e-64 Identity = 121/186 (65.05%), Postives = 153/186 (82.26%), Query Frame = 1 Query: 352 TSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP-SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +SG+ EG+ K +NSELWHACAGPLVSLP VG+ VVYFPQGHSEQVAA+ +KE+D+ IP YP+LP +LIC+L ++T+HAD ETDEVYAQMTLQP++ + +D + ELG+ +KQP +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDF++QPPAQELIA+DLHD+ W+ + ++ R PK Sbjct: 6 SSGVSPAPGEGEKKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDN-IPGYPSLPSKLICKLLSLTLHADSETDEVYAQMTLQPVNKYD-RDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFR-HIYRGQPK 188 HSP 2 Score: 71.2478 bits (173), Expect = 1.528e-11 Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 2 Query: 863 LSGKFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ 1156 +S KFRHI+RGQP+RH LT G SV VS KRL+AG+ F+ +K IRRA PQ + VLS +++ IG L + FT+F+NP+ Sbjct: 175 ISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGD-SVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGIL-AAAAHAAANSSPFTIFYNPR 270
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 1.012e-63 Identity = 120/186 (64.52%), Postives = 152/186 (81.72%), Query Frame = 1 Query: 352 TSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP-SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +SG+ EG+ K +NSELWHACAGPLVSLP VG+ VVYFPQGHSEQVAA+ +KE+D+ IP YP+LP +LIC+L ++T+HAD ETDEVY QMTLQP++ + +D + ELG+ +KQP +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDF++QPPAQELIA+DLHD+ W+ + ++ R PK Sbjct: 6 SSGVSPAPGEGEKKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDN-IPGYPSLPSKLICKLLSLTLHADSETDEVYVQMTLQPVNKYD-RDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFR-HIYRGQPK 188 HSP 2 Score: 71.2478 bits (173), Expect = 1.528e-11 Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 2 Query: 863 LSGKFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ 1156 +S KFRHI+RGQP+RH LT G SV VS KRL+AG+ F+ +K IRRA PQ + VLS +++ IG L + FT+F+NP+ Sbjct: 175 ISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGD-SVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGIL-AAAAHAAANSSPFTIFYNPR 270
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2) HSP 1 Score: 241.121 bits (614), Expect = 1.119e-62 Identity = 144/293 (49.15%), Postives = 177/293 (60.41%), Query Frame = 1 Query: 370 QGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQAL------PTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 +G + +NSELWHACAGPLVSLP G+ VVYFPQGHSEQVAA+ K+VD+H+P+YPNLP +LIC LHNVT+HAD ETDEVYAQMTLQP++ K+ EL + +P T +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDFS+QPPAQEL ARDLHD W + ++ R PK K G F +K LLLG N T + S +S+ +H+ L N ++ F P A P +F P KY K + Q+ Sbjct: 38 EGEKTKAPAINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHNVTLHADPETDEVYAQMTLQPVT-SYGKEALQLSELALKQARPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFR-HIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFVRDEKQQLLLGIRRANRQPTNISSSVL--------SSDSMHIGILAAAAHAAANNSPFTIFYNPRASPTEFV-IPFAKYQKAVYGNQI 319
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 4.251e-62 Identity = 116/176 (65.91%), Postives = 134/176 (76.14%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +G K +NSELWHACAGPLV LP G+ V YFPQGHSEQVAATT K +S IPNYPNLP QL+CQ+HN+T+HAD +TDEVYAQMTLQP++ E + SK PT YFCK LTASDTSTHGGFSVPRRAAEK+FP LD+S+QPP QELI RDLHD W + ++ R PK Sbjct: 30 QGAKKVINSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFR-HIYRGQPK 204
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2) HSP 1 Score: 239.195 bits (609), Expect = 4.251e-62 Identity = 116/176 (65.91%), Postives = 134/176 (76.14%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +G K +NSELWHACAGPLV LP G+ V YFPQGHSEQVAATT K +S IPNYPNLP QL+CQ+HN+T+HAD +TDEVYAQMTLQP++ E + SK PT YFCK LTASDTSTHGGFSVPRRAAEK+FP LD+S+QPP QELI RDLHD W + ++ R PK Sbjct: 30 QGAKKVINSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFR-HIYRGQPK 204
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2) HSP 1 Score: 238.81 bits (608), Expect = 5.552e-62 Identity = 115/187 (61.50%), Postives = 149/187 (79.68%), Query Frame = 1 Query: 349 STSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP-SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 S++G+ EG+ + +NSELWHACAGPL+SLP G+ VVYFPQGHSEQVAA+ K+ D IP+YPNLP +LIC LHNVT++AD ETDEVYAQMTLQP++ + +D + ++G+ ++QP +FCKTLTASDTSTHGGFSVPRRAAEK+FP+LDFS+QPP QEL+A+D+HD W + ++ R PK Sbjct: 5 SSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTD-FIPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYD-RDALLASDMGLKLNRQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFR-HIYRGQPK 188
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2) HSP 1 Score: 233.417 bits (594), Expect = 2.332e-60 Identity = 117/179 (65.36%), Postives = 140/179 (78.21%), Query Frame = 1 Query: 379 EGDNKC--LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 EG+ K +NSELWHACAGPLVSLP VG+ VVYFPQGHSEQVAA+ K+VD+H+P+YPNLP +LIC LH V +HAD +TDEVYAQMTLQP++ K+ EL + +P +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDFS+QPPAQEL ARD+HD W + ++ R PK Sbjct: 33 EGERKAAAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHGVNLHADPDTDEVYAQMTLQPVN-TYGKEALQISELALKQARPQMEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFR-HIYRGQPK 209
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3) HSP 1 Score: 228.794 bits (582), Expect = 5.745e-59 Identity = 134/290 (46.21%), Postives = 171/290 (58.97%), Query Frame = 1 Query: 397 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK---ASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQVFSCGEFGV 1251 +NSELWHACAGPLV LP VG+ V YF QGHSEQVA +T + + +PNYPNLP QL+CQ+HNVT+HAD ++DE+YAQM+LQP+ E +D F + G+ SK PT +FCKTLTASDTSTHGGFSVPRRAAEK+FP LD+S QPP QEL+ RDLH+ W + ++ R PK ++ L G K G F +K+ L++G N T +P S + H A + F F+ P P F P KY K Q+ FG+ Sbjct: 51 INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSE--RDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFR-HIYRGQPKRHLLTTGWSLFVG---SKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALP-SSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRAC--PAEFVIPLAKYRKAICGSQLSVGMRFGM 331
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2) HSP 1 Score: 227.639 bits (579), Expect = 1.280e-58 Identity = 116/184 (63.04%), Postives = 142/184 (77.17%), Query Frame = 1 Query: 373 GHEGDNKC---LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQ--KDTFVPIELGIPSKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 G EG+ + +N ELW+ACAGPLVSLP G+ +VYFPQGHSEQVAA+ K+ D+ IP+YPNLP +LIC LH+VTM AD +TDEVYA+MTLQP+S Q K+T + EL + +P T +FCKTLTASDTSTHGGFSVPRRAAE++FP LDFS+QPPAQEL ARDLHD W + ++ R PK Sbjct: 11 GEEGEGRGATKVNQELWYACAGPLVSLPPQGSLIVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFR-HIYRGQPK 193
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 4.419e-43 Identity = 87/167 (52.10%), Postives = 118/167 (70.66%), Query Frame = 1 Query: 406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 ELWHACAGPLV++P G RV YFPQGH EQ+ A+TN+++D ++P + NLP +++C + NV + A+ ++DEVYAQ+ LQP + + + + P EL K + FCKTLTASDTSTHGGFSV RR AE+ P LD S PP QEL+A+DLH EW + ++ R P+ Sbjct: 24 ELWHACAGPLVTVPKRGERVYYFPQGHMEQLEASTNQQLDQYLPMF-NLPSKILCSVVNVELRAEADSDEVYAQIMLQPEADQSELTSLDP-ELQDLEKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPPCQELVAKDLHGTEWHFR-HIFRGQPR 187 The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bpback to top |