DY262806

Overview
NameDY262806
Unique NameDY262806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1332
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 3.477e-64
Identity = 121/186 (65.05%), Postives = 153/186 (82.26%), Query Frame = 1
Query:  352 TSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP-SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +SG+     EG+ K +NSELWHACAGPLVSLP VG+ VVYFPQGHSEQVAA+ +KE+D+ IP YP+LP +LIC+L ++T+HAD ETDEVYAQMTLQP++  + +D  +  ELG+  +KQP  +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDF++QPPAQELIA+DLHD+ W+ + ++ R  PK
Sbjct:    6 SSGVSPAPGEGEKKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDN-IPGYPSLPSKLICKLLSLTLHADSETDEVYAQMTLQPVNKYD-RDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFR-HIYRGQPK 188          

HSP 2 Score: 71.2478 bits (173), Expect = 1.528e-11
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  863 LSGKFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ 1156
            +S KFRHI+RGQP+RH LT G SV VS KRL+AG+    F+  +K      IRRA  PQ    + VLS +++ IG L    +        FT+F+NP+
Sbjct:  175 ISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGD-SVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGIL-AAAAHAAANSSPFTIFYNPR 270          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.012e-63
Identity = 120/186 (64.52%), Postives = 152/186 (81.72%), Query Frame = 1
Query:  352 TSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP-SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +SG+     EG+ K +NSELWHACAGPLVSLP VG+ VVYFPQGHSEQVAA+ +KE+D+ IP YP+LP +LIC+L ++T+HAD ETDEVY QMTLQP++  + +D  +  ELG+  +KQP  +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDF++QPPAQELIA+DLHD+ W+ + ++ R  PK
Sbjct:    6 SSGVSPAPGEGEKKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDN-IPGYPSLPSKLICKLLSLTLHADSETDEVYVQMTLQPVNKYD-RDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFR-HIYRGQPK 188          

HSP 2 Score: 71.2478 bits (173), Expect = 1.528e-11
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  863 LSGKFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ 1156
            +S KFRHI+RGQP+RH LT G SV VS KRL+AG+    F+  +K      IRRA  PQ    + VLS +++ IG L    +        FT+F+NP+
Sbjct:  175 ISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGD-SVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGIL-AAAAHAAANSSPFTIFYNPR 270          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 1.119e-62
Identity = 144/293 (49.15%), Postives = 177/293 (60.41%), Query Frame = 1
Query:  370 QGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQAL------PTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227
            +G +     +NSELWHACAGPLVSLP  G+ VVYFPQGHSEQVAA+  K+VD+H+P+YPNLP +LIC LHNVT+HAD ETDEVYAQMTLQP++    K+     EL +   +P T +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDFS+QPPAQEL ARDLHD  W  + ++ R  PK              K    G    F   +K  LLLG    N   T +  S          +S+ +H+  L         N  ++ F  P A P +F   P  KY K  +  Q+
Sbjct:   38 EGEKTKAPAINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHNVTLHADPETDEVYAQMTLQPVT-SYGKEALQLSELALKQARPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFR-HIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFVRDEKQQLLLGIRRANRQPTNISSSVL--------SSDSMHIGILAAAAHAAANNSPFTIFYNPRASPTEFV-IPFAKYQKAVYGNQI 319          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 4.251e-62
Identity = 116/176 (65.91%), Postives = 134/176 (76.14%), Query Frame = 1
Query:  379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +G  K +NSELWHACAGPLV LP  G+ V YFPQGHSEQVAATT K  +S IPNYPNLP QL+CQ+HN+T+HAD +TDEVYAQMTLQP++ E        +     SK PT YFCK LTASDTSTHGGFSVPRRAAEK+FP LD+S+QPP QELI RDLHD  W  + ++ R  PK
Sbjct:   30 QGAKKVINSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFR-HIYRGQPK 204          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 4.251e-62
Identity = 116/176 (65.91%), Postives = 134/176 (76.14%), Query Frame = 1
Query:  379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +G  K +NSELWHACAGPLV LP  G+ V YFPQGHSEQVAATT K  +S IPNYPNLP QL+CQ+HN+T+HAD +TDEVYAQMTLQP++ E        +     SK PT YFCK LTASDTSTHGGFSVPRRAAEK+FP LD+S+QPP QELI RDLHD  W  + ++ R  PK
Sbjct:   30 QGAKKVINSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFR-HIYRGQPK 204          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 5.552e-62
Identity = 115/187 (61.50%), Postives = 149/187 (79.68%), Query Frame = 1
Query:  349 STSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP-SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            S++G+     EG+ + +NSELWHACAGPL+SLP  G+ VVYFPQGHSEQVAA+  K+ D  IP+YPNLP +LIC LHNVT++AD ETDEVYAQMTLQP++  + +D  +  ++G+  ++QP  +FCKTLTASDTSTHGGFSVPRRAAEK+FP+LDFS+QPP QEL+A+D+HD  W  + ++ R  PK
Sbjct:    5 SSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTD-FIPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYD-RDALLASDMGLKLNRQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFR-HIYRGQPK 188          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 2.332e-60
Identity = 117/179 (65.36%), Postives = 140/179 (78.21%), Query Frame = 1
Query:  379 EGDNKC--LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            EG+ K   +NSELWHACAGPLVSLP VG+ VVYFPQGHSEQVAA+  K+VD+H+P+YPNLP +LIC LH V +HAD +TDEVYAQMTLQP++    K+     EL +   +P   +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDFS+QPPAQEL ARD+HD  W  + ++ R  PK
Sbjct:   33 EGERKAAAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHGVNLHADPDTDEVYAQMTLQPVN-TYGKEALQISELALKQARPQMEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFR-HIYRGQPK 209          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 5.745e-59
Identity = 134/290 (46.21%), Postives = 171/290 (58.97%), Query Frame = 1
Query:  397 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK---ASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQVFSCGEFGV 1251
            +NSELWHACAGPLV LP VG+ V YF QGHSEQVA +T +   + +PNYPNLP QL+CQ+HNVT+HAD ++DE+YAQM+LQP+  E  +D F   + G+   SK PT +FCKTLTASDTSTHGGFSVPRRAAEK+FP LD+S QPP QEL+ RDLH+  W  + ++ R  PK    ++   L  G    K    G    F   +K+ L++G    N   T +P S  +     H         A   +  F  F+ P     P  F  P  KY K     Q+     FG+
Sbjct:   51 INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSE--RDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFR-HIYRGQPKRHLLTTGWSLFVG---SKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALP-SSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRAC--PAEFVIPLAKYRKAICGSQLSVGMRFGM 331          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 1.280e-58
Identity = 116/184 (63.04%), Postives = 142/184 (77.17%), Query Frame = 1
Query:  373 GHEGDNKC---LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQ--KDTFVPIELGIPSKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            G EG+ +    +N ELW+ACAGPLVSLP  G+ +VYFPQGHSEQVAA+  K+ D+ IP+YPNLP +LIC LH+VTM AD +TDEVYA+MTLQP+S   Q  K+T +  EL +   +P T +FCKTLTASDTSTHGGFSVPRRAAE++FP LDFS+QPPAQEL ARDLHD  W  + ++ R  PK
Sbjct:   11 GEEGEGRGATKVNQELWYACAGPLVSLPPQGSLIVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFR-HIYRGQPK 193          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.419e-43
Identity = 87/167 (52.10%), Postives = 118/167 (70.66%), Query Frame = 1
Query:  406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            ELWHACAGPLV++P  G RV YFPQGH EQ+ A+TN+++D ++P + NLP +++C + NV + A+ ++DEVYAQ+ LQP + + +  +  P EL    K   + FCKTLTASDTSTHGGFSV RR AE+  P LD S  PP QEL+A+DLH  EW  + ++ R  P+
Sbjct:   24 ELWHACAGPLVTVPKRGERVYYFPQGHMEQLEASTNQQLDQYLPMF-NLPSKILCSVVNVELRAEADSDEVYAQIMLQPEADQSELTSLDP-ELQDLEKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPPCQELVAKDLHGTEWHFR-HIFRGQPR 187          
The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFP_ORYSJ3.477e-6465.05Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI1.012e-6364.52Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFS_ORYSJ1.119e-6249.15Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSJ4.251e-6265.91Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI4.251e-6265.91Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFG_ARATH5.552e-6261.50Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFE_ORYSJ2.332e-6065.36Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFE_ARATH5.745e-5946.21Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFU_ORYSJ1.280e-5863.04Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFI_ORYSJ4.419e-4352.10Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bp
CTGTCATAGGGCGACAAAATTTATTAATTAAAAAAAGAAAAAAAGAGAAG
AAAAGCTCCTTCTCCGCTCCCATCCCATGGCGATCTCTCAGAAAAGAGGC
AAATGTTGTTGCACTGGGAGCTTTTTACTTAGTTTCTGAGAGAAAGTAGA
GCACATCCATGGATTTGGGTTTGGTTTGATCTTGATTTTGATTTGCACAG
ATGGTGTGAATTGCAAGACCGAGATTGAATTGAAGATGAGCGATATAAGT
TAGGTCTTTAGTATTTTATAATTAAATTATATGTTTCTGTCGTTTAAAAA
ATTAAAAAAATAATAAAAGCAATATAAAAGTGTGAGTGAATGAAGCTTTC
AACATCAGGGCTGTGTCAACAGGGTCATGAAGGGGATAATAAGTGTTTGA
ATTCGGAGCTATGGCACGCCTGTGCTGGGCCGTTGGTGTCCCTACCTACG
GTGGGCACCCGTGTGGTTTACTTCCCTCAGGGGCATAGCGAACAGGTAGC
TGCCACAACTAATAAAGAAGTTGATAGCCATATTCCCAATTACCCGAACT
TGCCACCGCAGTTGATATGCCAACTTCACAATGTCACTATGCATGCTGAT
GTTGAAACGGATGAAGTGTATGCGCAAATGACTCTTCAGCCTTTGTCGCC
GGAAGAGCAGAAGGATACATTTGTTCCCATCGAATTGGGAATTCCAAGCA
AGCAGCCCACAAATTATTTCTGCAAGACTTTAACCGCAAGTGATACTAGT
ACACATGGAGGGTTTTCTGTTCCTCGTCGTGCTGCCGAGAAAGTCTTCCC
TTCGCTGGATTTCTCACTGCAACCACCAGCTCAGGAACTCATTGCAAGGG
ATCTCCATGATGTTGAGTGGGAAGTTCAGGCATATCTTTCGAGGACAGCC
CCAAAGGCATCCTCTCACCAAGGGCTGAAGTGTGGTTGTTAGTGCCAAAA
GACTAATTGCTGGGGAATTCTGTTCTTTTTTTTTGGGATGAAAAAAAATC
ACCTTCTTTTGGGAAATTCGCCGTGCAATCCCCCCACAACTGGTATGCCC
TACTCTGGTTTTGTCCCGTGAAAACTTGCCCATTGGAACTCTAACCTGCT
GCACCTCCAGGCCCTGCCCACCAAAAATTTGTTTTACAGTTTTTTTTAAC
CCCCAGGGGCAATTCCTCCCAAATTTTTTAAACACCCGCCACAAAAATAT
TCAAAACAATTTTTTTCCCCACAGGTGTTTTCTTGTGGGGAATTCGGTGT
TTTCTGAAAGCTCTTTTTTTGGAAGAGCAGAAAAAAACAACACACCCGTT
TCTCGAAGGAACACCATGAGGGGTGAAACACA
back to top