DY262806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2) HSP 1 Score: 345.125 bits (884), Expect = 5.500e-94 Identity = 178/239 (74.48%), Postives = 193/239 (80.75%), Query Frame = 1 Query: 340 MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYS 1056 MKLSTSGL QQGHEG+ KCLNSELWHACAGPLVSLP+ G+RVVYFPQGHSEQVAATTNKEVD HIPNYP+LPPQLICQLHNVTMHADVETDEVYAQMTLQPL+PEEQK+TFVPIELGIPSKQP+NYFCKTLTASDTSTHGGFSVPRRAAEKVFP LD++LQPPAQELIARDLHDVEW+ + ++ R PK K G F +KN L LG P T +P S Sbjct: 1 MKLSTSGLGQQGHEGE-KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSS 237 HSP 2 Score: 82.0333 bits (201), Expect = 8.658e-15 Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 2 Query: 872 KFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ 1156 KFRHIFRGQP+RH LT G SV VSAKRL+AG+ F +K F IR A PQ + P+ VLS +++ IG L + CFTVFF+P+ Sbjct: 177 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRN-EKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAA-AHASATNSCFTVFFHPR 269
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2) HSP 1 Score: 320.857 bits (821), Expect = 1.111e-86 Identity = 179/305 (58.69%), Postives = 208/305 (68.20%), Query Frame = 1 Query: 340 MKLSTSGLCQQGHE--GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHL-------QALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 M+LS++G Q HE G+ + LNSELWHACAGPLVSLP VG+RVVYFPQGHSEQVAA+TNKEVD+HIPNYP+L PQLICQLHNVTMHADVETDEVYAQMTLQPL+ +EQKD ++P ELG+PS+QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LD+S QPPAQEL+ARDLHD EW+ + ++ R PK K G F KN LLLG N P T MP S +S+ +HL A T + F F+ P + P F P KY K + +V Sbjct: 1 MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVL--------SSDSMHLGLLAAAAHAAATNSRFTIFYNPRAS--PSEFVIPLAKYVKAVYHTRV 294
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 2.736e-85 Identity = 170/283 (60.07%), Postives = 195/283 (68.90%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 E + KCLNSELWHACAGPLV LPTVGTRVVYFPQGHSEQVAA+TNKEV+ HIPNYPNLP QLICQLH+VTMHADVETDEVYAQMTLQPL+P+EQ D ++P E+GI SKQPTNYFCKTLTASDTSTHGGFSVPRRAAE+VFP LDF+ QPPAQELIARD+HD+EW+ + ++ R PK K G F +KN LLLG + P T MP S + H A T + F F+ P + P F P KY K F ++ Sbjct: 22 EEEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMP-SSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRAS--PSEFVIPLSKYIKAVFHTRI 300
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 2.736e-85 Identity = 170/283 (60.07%), Postives = 195/283 (68.90%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 E + KCLNSELWHACAGPLV LPTVGTRVVYFPQGHSEQVAA+TNKEV+ HIPNYPNLP QLICQLH+VTMHADVETDEVYAQMTLQPL+P+EQ D ++P E+GI SKQPTNYFCKTLTASDTSTHGGFSVPRRAAE+VFP LDF+ QPPAQELIARD+HD+EW+ + ++ R PK K G F +KN LLLG + P T MP S + H A T + F F+ P + P F P KY K F ++ Sbjct: 22 EEEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMP-SSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRAS--PSEFVIPLSKYIKAVFHTRI 300
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1) HSP 1 Score: 314.309 bits (804), Expect = 1.040e-84 Identity = 173/284 (60.92%), Postives = 193/284 (67.96%), Query Frame = 1 Query: 376 HEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 ++G+ +CLNSELWHACAGPLVSLP V +RVVYFPQGHSEQVAA+TNKEVD+ IPNYPNLPPQLICQLHNVTMHAD ETDEVYAQMTLQPLSPEEQK+ F+P+ELG SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LDFS QPPAQELIARDLHD EW+ + ++ R PK K G F N LLLG N T MP S + H A T + F F+ P + P F P KY K + +V Sbjct: 18 NDGEQRCLNSELWHACAGPLVSLPVVRSRVVYFPQGHSEQVAASTNKEVDAQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPEEQKEPFLPMELGAASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNDNNQLLLGIRRANRQQTVMP-SSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRAS--PSEFVIPLAKYVKAVYHTRV 297
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 1.660e-82 Identity = 168/281 (59.79%), Postives = 189/281 (67.26%), Query Frame = 1 Query: 385 DNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 + KCLNSELWHACAGPLVSLP VG+RVVYFPQGHSEQVAA+TNKE++S IPNYPNLPPQLICQLHNVTMHAD ETDEVYAQMTLQPLSP+E KD F+P ELG SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LDF+ QPPAQEL+A+DLH EW+ + ++ R PK K G F N LLLG N P T MP S + H A T + F F+ P + P F P KY K + ++ Sbjct: 23 EQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMP-SSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRAS--PSEFVIPLAKYVKAVYHTRI 299
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 1.660e-82 Identity = 168/281 (59.79%), Postives = 189/281 (67.26%), Query Frame = 1 Query: 385 DNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 + KCLNSELWHACAGPLVSLP VG+RVVYFPQGHSEQVAA+TNKE++S IPNYPNLPPQLICQLHNVTMHAD ETDEVYAQMTLQPLSP+E KD F+P ELG SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LDF+ QPPAQEL+A+DLH EW+ + ++ R PK K G F N LLLG N P T MP S + H A T + F F+ P + P F P KY K + ++ Sbjct: 23 EQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMP-SSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRAS--PSEFVIPLAKYVKAVYHTRI 299
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1) HSP 1 Score: 305.834 bits (782), Expect = 3.698e-82 Identity = 167/281 (59.43%), Postives = 189/281 (67.26%), Query Frame = 1 Query: 385 DNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 + KCLNSELWHACAGPLVSLP VG+RVVYFPQGHSEQVAA+TNKE++S IPNYPNLPPQLICQLHNVTMHAD ETDEVYAQMTLQPLSP+E KD ++P ELG +KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LDF+ QPPAQELIA+DLH EW+ + ++ R PK K G F N LLLG N P T MP S + H A T + F F+ P + P F P KY K + ++ Sbjct: 23 EQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMP-SSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRAS--PSEFVIPLSKYVKAVYHTRI 299
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1) HSP 1 Score: 305.834 bits (782), Expect = 3.698e-82 Identity = 167/281 (59.43%), Postives = 189/281 (67.26%), Query Frame = 1 Query: 385 DNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSPQV 1227 + KCLNSELWHACAGPLVSLP VG+RVVYFPQGHSEQVAA+TNKE++S IPNYPNLPPQLICQLHNVTMHAD ETDEVYAQMTLQPLSP+E KD ++P ELG +KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFP LDF+ QPPAQELIA+DLH EW+ + ++ R PK K G F N LLLG N P T MP S + H A T + F F+ P + P F P KY K + ++ Sbjct: 23 EQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFR-HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMP-SSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRAS--PSEFVIPLSKYVKAVYHTRI 299
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2) HSP 1 Score: 249.21 bits (635), Expect = 4.108e-65 Identity = 120/190 (63.16%), Postives = 152/190 (80.00%), Query Frame = 1 Query: 340 MKLSTSGLCQQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIP-SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 MK ++G +EG+ K +NS+LWHACAGPLVSLP VG+ VVYFPQGHSEQVAA+ K+ D IPNYPNLP +LIC LH+VT+HAD ETDEVYAQMTLQP++ + ++ + ++G+ ++QPT +FCKTLTASDTSTHGGFSVPRRAAEK+FP LDFS+QPPAQE++A+DLHD W + ++ R PK Sbjct: 1 MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTD-FIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYD-REALLASDMGLKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFR-HIYRGQPK 187 The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bpback to top |