DY262806

Overview
NameDY262806
Unique NameDY262806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1332
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.089e-41
Identity = 87/170 (51.18%), Postives = 119/170 (70.00%), Query Frame = 1
Query:  397 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            L  ELWHACAGPLV++P  G  V YFPQGH EQ+ A+T++++D H+P + NLP +++C++ NV + A+ ++DEVYAQ+ LQP + + +  +  P E   P K   + FCKTLTASDTSTHGGFSV RR AE+  P LD +  PP QEL+ARDLH  EW  + ++ R  P+
Sbjct:   23 LYRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLF-NLPSKILCKVVNVELRAETDSDEVYAQIMLQPEADQNELTSPKP-EPHEPEKCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHFR-HIFRGQPR 189          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.422e-41
Identity = 87/170 (51.18%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  397 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            L  ELWHACAGPLV++P    RV YFPQGH EQV A+TN+  +  +P Y +LP +L+C++ NV + A+ +TDEVYAQ+TL P + +++        L  P +   + FCKTLTASDTSTHGGFSV RR A++  P LD S QPP QEL+A+DLH  EW  + ++ R  P+
Sbjct:   58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFR-HIFRGQPR 225          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 3.167e-41
Identity = 91/185 (49.19%), Postives = 122/185 (65.95%), Query Frame = 1
Query:  373 GHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNY-------FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            G  G    L +ELW ACAGPLV++P VG +V YFPQGH EQV A+TN+  +  +  Y NLP +++C++ NV + A+ +TDEVYAQ+TL P S +++ +     E  +PS     +       FCKTLTASDTSTHGGFSV RR A++  P LD S QPP QEL+A+DLH VEW  + ++ R  P+
Sbjct:   30 GGGGGEDALFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLY-NLPWKILCEVMNVELKAEPDTDEVYAQLTLLPESKQQEDNGSTEEE--VPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFR-HIFRGQPR 210          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 5.402e-41
Identity = 101/255 (39.61%), Postives = 143/255 (56.08%), Query Frame = 1
Query:  397 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQK---DTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*P 1152
            L  ELWHACAGPLV++P VG  V YFPQGH EQV A+ N+  DS +  Y +LP +L+C++ NV + A+ +TDEVYAQ+ L P  PE+ +   +   P    + ++ P   FCKTLTASDTSTHGGFSV RR A++  P LD +  PP QEL+A+DLH ++W  + ++ R  P+    Q         K    G  F F   +   L +G        + +P S  +  +  H         A+ TK++F  ++ P
Sbjct:   21 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLY-DLPSKLLCRVLNVELKAEQDTDEVYAQVMLMP-EPEQNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHSMDWRFR-HIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVP-SSVISSQSMHLGVLATAWHAINTKSMFTVYYKP 271          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.572e-40
Identity = 90/185 (48.65%), Postives = 121/185 (65.41%), Query Frame = 1
Query:  373 GHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNY-------FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            G  G    L +ELW ACAGPLV++P VG +V YFPQGH EQV A+TN+  +  +  Y NLP +++C++ NV + A+ +TDEVYAQ+TL P   +++ +     E  +PS     +       FCKTLTASDTSTHGGFSV RR A++  P LD S QPP QEL+A+DLH VEW  + ++ R  P+
Sbjct:   30 GGGGGEDALFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLY-NLPWKILCEVMNVELKAEPDTDEVYAQLTLLPELKQQEDNGSTEEE--VPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFR-HIFRGQPR 210          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.053e-40
Identity = 86/168 (51.19%), Postives = 115/168 (68.45%), Query Frame = 1
Query:  406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            ELWHACAGPLV+LP  G RV YFP+GH EQ+ A+ ++ ++  +P++ NLP +++C++ N+   A+ ETDEVYAQ+TL P L   E      P++   P K   + FCKTLTASDTSTHGGFSV RR A+   P LD S QPP QEL+A DLH+ EW  + ++ R  P+
Sbjct:   22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF-NLPSKILCKVINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQE--PEKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFR-HIFRGQPR 185          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 2.681e-40
Identity = 89/171 (52.05%), Postives = 117/171 (68.42%), Query Frame = 1
Query:  397 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEV-DSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            L +ELW ACAGPLV +P  G RV YFPQGH EQ+ A+TN+ V D  IP + NLPP+++C++ +VT+ A+ ETDEVYAQ+TLQP   + +  +  P  L  P+K   + F K LTASDTSTHGGFSV R+ A +  PSLD +   P QEL+ARDLH  EW  + ++ R  P+
Sbjct:   39 LYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDP-PLVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFK-HIFRGQPR 206          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.502e-40
Identity = 124/311 (39.87%), Postives = 159/311 (51.13%), Query Frame = 1
Query:  349 STSGLCQQGHE------GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSP--------EEQKDTFVPIELGIPS--KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWN--SNLLHL--QALPTKNLFYSFF*PPGAIPPKFFKHPPQKYSKQFFSP 1221
            S+S  C  G        G    + SELWHACAGPL  LP  G  VVYFPQGH EQ A  +       IP + +L PQ++C++ NV + A+ +TDEVY Q+TL PL          +E K+     E    S  K+  + FCKTLTASDTSTHGGFSVPRRAAE  F  LD+  Q P+QELIA+DLH VEW+ + ++ R  P+             QK    G    F   +   L LG      P  G+P S      +   N  SN+L L   A+ TK++F+ F+ P        F  P +KY     SP
Sbjct:   40 SSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSS-PLEIPKF-DLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFR-HIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDS------IIEKNSCSNILSLVANAVSTKSMFHVFYSPRATHAE--FVIPYEKYITSIRSP 339          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.126e-38
Identity = 83/170 (48.82%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  397 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            L +ELW  CAGPLV +P    RV YFPQGH EQ+ A+TN+ ++S      +LPP+++C++ +VT+ A+ ETDEVYAQ+TLQP   + +  +  P  +G P+KQ  + F K LTASDTSTHGGFSV R+ A +  PSLD +   P QEL+ RDLH  EW  + ++ R  P+
Sbjct:   22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPIVG-PTKQEFHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFK-HIFRGQPR 189          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.536e-38
Identity = 86/179 (48.04%), Postives = 113/179 (63.13%), Query Frame = 1
Query:  406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEE---------QKDTFVPIELGIPS---KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            ELW ACAGPLV++P VG RV Y PQGH EQV A+TN+  +       NLP ++ C++ NV + A+ +TDEVYAQ+TL P   ++          KD     E+  P+   +   + FCKTLTASDTSTHGGFSV RR A++  P LD S  PP QEL+A+DLH VEW  + ++ R  P+
Sbjct:   32 ELWRACAGPLVTVPAVGERVFYLPQGHIEQVEASTNQVAEQQGAPLYNLPWKIPCKVMNVELKAEPDTDEVYAQLTLLPEKQQDGNGSGNGNVSKDKVEEEEVVPPAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQHPPTQELVAKDLHGVEWRFR-HIFRGQPR 209          
The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFG_ORYSJ1.089e-4151.18Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFB_ARATH1.422e-4151.18Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFW_ORYSJ3.167e-4149.19Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFD_ORYSJ5.402e-4139.61Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFW_ORYSI1.572e-4048.65Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFA_ARATH2.053e-4051.19Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFK_ARATH2.681e-4052.05Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFD_ARATH3.502e-4039.87Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFR_ARATH1.126e-3848.82Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFX_ORYSJ9.536e-3848.04Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bp
CTGTCATAGGGCGACAAAATTTATTAATTAAAAAAAGAAAAAAAGAGAAG
AAAAGCTCCTTCTCCGCTCCCATCCCATGGCGATCTCTCAGAAAAGAGGC
AAATGTTGTTGCACTGGGAGCTTTTTACTTAGTTTCTGAGAGAAAGTAGA
GCACATCCATGGATTTGGGTTTGGTTTGATCTTGATTTTGATTTGCACAG
ATGGTGTGAATTGCAAGACCGAGATTGAATTGAAGATGAGCGATATAAGT
TAGGTCTTTAGTATTTTATAATTAAATTATATGTTTCTGTCGTTTAAAAA
ATTAAAAAAATAATAAAAGCAATATAAAAGTGTGAGTGAATGAAGCTTTC
AACATCAGGGCTGTGTCAACAGGGTCATGAAGGGGATAATAAGTGTTTGA
ATTCGGAGCTATGGCACGCCTGTGCTGGGCCGTTGGTGTCCCTACCTACG
GTGGGCACCCGTGTGGTTTACTTCCCTCAGGGGCATAGCGAACAGGTAGC
TGCCACAACTAATAAAGAAGTTGATAGCCATATTCCCAATTACCCGAACT
TGCCACCGCAGTTGATATGCCAACTTCACAATGTCACTATGCATGCTGAT
GTTGAAACGGATGAAGTGTATGCGCAAATGACTCTTCAGCCTTTGTCGCC
GGAAGAGCAGAAGGATACATTTGTTCCCATCGAATTGGGAATTCCAAGCA
AGCAGCCCACAAATTATTTCTGCAAGACTTTAACCGCAAGTGATACTAGT
ACACATGGAGGGTTTTCTGTTCCTCGTCGTGCTGCCGAGAAAGTCTTCCC
TTCGCTGGATTTCTCACTGCAACCACCAGCTCAGGAACTCATTGCAAGGG
ATCTCCATGATGTTGAGTGGGAAGTTCAGGCATATCTTTCGAGGACAGCC
CCAAAGGCATCCTCTCACCAAGGGCTGAAGTGTGGTTGTTAGTGCCAAAA
GACTAATTGCTGGGGAATTCTGTTCTTTTTTTTTGGGATGAAAAAAAATC
ACCTTCTTTTGGGAAATTCGCCGTGCAATCCCCCCACAACTGGTATGCCC
TACTCTGGTTTTGTCCCGTGAAAACTTGCCCATTGGAACTCTAACCTGCT
GCACCTCCAGGCCCTGCCCACCAAAAATTTGTTTTACAGTTTTTTTTAAC
CCCCAGGGGCAATTCCTCCCAAATTTTTTAAACACCCGCCACAAAAATAT
TCAAAACAATTTTTTTCCCCACAGGTGTTTTCTTGTGGGGAATTCGGTGT
TTTCTGAAAGCTCTTTTTTTGGAAGAGCAGAAAAAAACAACACACCCGTT
TCTCGAAGGAACACCATGAGGGGTGAAACACA
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