DY262806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 9.536e-38 Identity = 88/184 (47.83%), Postives = 116/184 (63.04%), Query Frame = 1 Query: 382 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQK---DTFVPIELG------IPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 G CL ELWHACAGPL+SLP G+ V+YFPQGH EQ D Y LPP + C++ +V +HA+ TDEVYAQ++L P S + ++ + + ++ G + + FCKTLTASDTSTHGGFSVPRRAAE FP LD+S P+QEL+ARDLH +EW + ++ R P+ Sbjct: 48 GGGVCL--ELWHACAGPLISLPKRGSLVLYFPQGHLEQAP-------DFSAAIY-GLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFR-HIYRGQPR 220
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 6.834e-36 Identity = 86/190 (45.26%), Postives = 114/190 (60.00%), Query Frame = 1 Query: 370 QGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQK-----------DTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 + G CL ELWHACAGP+ LP G+ VVY PQGH E + A + +P P + C++ +V++HAD TDEVYAQ++L + E ++ D + P++ P + FCKTLTASDTSTHGGFSVPRRAAE FP LD+SLQ P QEL+A+DLH EW + ++ R P+ Sbjct: 29 EARAGGAVCL--ELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAAVP------PHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIP-HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFR-HIYRGQPR 208
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 4.897e-34 Identity = 83/172 (48.26%), Postives = 106/172 (61.63%), Query Frame = 1 Query: 406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPE-EQKDTFVPIELGIPSKQP----TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 ELWHACAGP+ LP G VVY PQGH E + + + +PP + C++ +VT+ AD TDEVYAQ++L P E ++ E G KQ + FCKTLTASDTSTHGGFSVPRRAAE FP LD+S Q P+QEL+A+DLH EW + ++ R P+ Sbjct: 38 ELWHACAGPVAPLPRKGGVVVYLPQGHLEHLG-----DAPAAAAAAAAVPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHSTEWRFR-HIYRGQPR 203
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 8.455e-34 Identity = 67/169 (39.64%), Postives = 100/169 (59.17%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870 +G + +LW CAGPL +P +G V YFPQG+ E V A+T +E++ P +LP +L C++ + + + +DE+YA++TL P + P + ++ F P+ N F K LTASDTS +GGFSVP++ A + P LD S PAQE++A DLHD +W Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQP-ICDLPSKLQCRVIAIHLKVENNSDEIYAEITLMPDTTQVVIPTQSENRFRPL---------VNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQW 176 HSP 2 Score: 41.2022 bits (95), Expect = 8.455e-34 Identity = 30/103 (29.13%), Postives = 52/103 (50.49%), Query Frame = 2 Query: 872 KFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ-GQFLPNF 1177 +FRH +RG PQRH LT G + +++K+L+ G+ F G + IRRA Q P+ ++S + + G + + F V + P+ QF+ ++ Sbjct: 177 RFRHNYRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVRG-ETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVI-ASAKHAFDNQCIFIVVYKPRSSQFIVSY 277
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 8.458e-34 Identity = 68/169 (40.24%), Postives = 98/169 (57.99%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870 +G + +LW CAGPL +P +G +V YFPQGH E V +T +E++ P +LP +L C++ + + + +DE YA++TL P + P + ++ F P+ N F K LTASDTS HGGF VP++ A + PSLD S PAQEL+A DLH +W Sbjct: 18 DGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQP-ICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQNENQFRPL---------VNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQW 176 HSP 2 Score: 40.817 bits (94), Expect = 8.458e-34 Identity = 29/95 (30.53%), Postives = 47/95 (49.47%), Query Frame = 2 Query: 872 KFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ 1156 +F H +RG PQRH LT G + ++K+L+AG+ F G + IRRA Q P+ ++S + + G + + FTV + P+ Sbjct: 177 RFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRG-ETGELRVGIRRARHQQGNIPSSIVSIDCMRHG-VVASAKHAFDNQCMFTVVYKPR 269
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.575e-32 Identity = 79/178 (44.38%), Postives = 106/178 (59.55%), Query Frame = 1 Query: 373 GHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 G GD + L +ELW ACAGPLV +P RV YF QGH EQ+ T+ + + +P +++C++ NV + A+ ETDEV+AQ+TLQP +E T L + + FCK LT SDTSTHGGFSV RR A + P LD S+ P QELI +DLH EW + ++ R P+ Sbjct: 8 GGVGDPE-LFAELWRACAGPLVEVPQRDERVFYFLQGHLEQLQEPTDPALLAEQIKMFQVPYKILCKVVNVELKAETETDEVFAQITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFK-HIYRGQPR 183
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.058e-32 Identity = 94/256 (36.72%), Postives = 133/256 (51.95%), Query Frame = 1 Query: 397 LNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNK-EVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFV---PIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPKASSHQGLKCGC*CQKTNCWGILFFFFGMKKNHLLLGNSPCNPPTTGMPYSGFVP*KLAHWNSNLLHLQALPTKNLFYSFF*P 1152 L ELW CAGPLV +P RV YFPQGH EQ+ A+T + ++++ P + LPP+++C + NV++ A+ +TDEVYAQ+TL P+ E + P EL P + F K LTASDTSTHGGFSV R+ A + P LD + Q P QEL+A D+H +W+ + ++ R P+ K G F F + L +G N + MP S + H A TK +F ++ P Sbjct: 9 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFV-LPPKILCNVMNVSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPK---VHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFK-HIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMP-SSVISSHSMHLGVLATARHATQTKTMFIVYYKP 258
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 6.235e-31 Identity = 64/169 (37.87%), Postives = 96/169 (56.80%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870 +G + +LW CAGPL +P +G ++ YFPQG+ E V A+T +E++ P +LP +L C++ + + + +DE YA++TL P + P + ++ F P+ N F K LTASDTS GGF VP++ A + P LD S P QEL+A DLH +W Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKP-ICDLPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNENQFRPL---------VNSFTKVLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQW 174 HSP 2 Score: 42.743 bits (99), Expect = 6.235e-31 Identity = 31/103 (30.10%), Postives = 52/103 (50.49%), Query Frame = 2 Query: 872 KFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ-GQFLPNF 1177 +F H +RG PQRH LT G + ++K+L+AG+ F G + IRRA Q P+ ++S E++ G + + F V + P+ QF+ ++ Sbjct: 175 RFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRG-ETGELRVGIRRAGHQQGNIPSSIISIESMRHGVI-ASAKHAFDNQCMFIVVYKPRSSQFIVSY 275
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3) HSP 1 Score: 112.464 bits (280), Expect = 2.333e-30 Identity = 64/156 (41.03%), Postives = 89/156 (57.05%), Query Frame = 1 Query: 406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYF-CKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870 +LW+ CAGPL LP G +V YFPQGH E + +T E+D HI +LP +L C++ + D TDEVYAQ++L P + E + +++P YF K LTASD S GG +P++ A + FP LD S Q L+A+DL+ EW Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELD-HIRPIFDLPSKLRCRVVAIDRKVDKNTDEVYAQISLMPDTTEVMTHNTT-----MDTRRPIVYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEW 174 HSP 2 Score: 42.3578 bits (98), Expect = 2.333e-30 Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 2 Query: 875 FRHIFRGQPQRHPLTK--G*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNP-QGQFLPNF 1177 F+H+FRG PQRH T G SV + KRLI G+ G + + IRRA Q P+ V+S + G + + K F V + P QF+ ++ Sbjct: 176 FKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRG-ENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVN-AFKTKCMFNVVYKPSSSQFVISY 277
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 2.334e-30 Identity = 64/169 (37.87%), Postives = 96/169 (56.80%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870 +G + +LW CAGPL +P +G V YFPQG+ E V A+T +E++ P +LP +L C++ + + + +DE YA++TL P + P + ++ F P+ N F K LTASDTS +GGF VP++ A + P L PAQEL+A+DLH +W Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQP-ICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQSENQFRPL---------VNSFTKVLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQW 172 HSP 2 Score: 41.2022 bits (95), Expect = 2.334e-30 Identity = 40/145 (27.59%), Postives = 65/145 (44.83%), Query Frame = 2 Query: 872 KFRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNP---QGQFLPNFLNTRHKNIQNNFFPHRCFLVGNSV--------FSESSFFG 1273 +FRH +RG PQRH LT G + ++K+L+ G+ F G + IRRA Q P+ ++S + + G + + F V + P QF+ ++ + + NN F+VG+ FSE +FG Sbjct: 173 RFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRG-ETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVI-ASAKHALDNQCIFIVVYKPSIRSSQFIVSY--DKFLDAMNN-----KFIVGSRFTMRFEGDDFSERRYFG 308 The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bpback to top |