DY262806

Overview
NameDY262806
Unique NameDY262806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1332
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.515e-30
Identity = 70/186 (37.63%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  373 GHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEE----QKDTFVPI----ELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            G   + +CL+ +LWHACAG +V +P   +RV YF QGH+E           +       LPP ++C++  V   AD ++DEVYA++ L P++P E    + D   P+    +   PS +    F KTLT SD +  GGFSVPR  AE +FP LD+   PP Q ++A+D+H V W+ + ++ R  P+
Sbjct:    5 GEVEEVRCLDPQLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRALPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFR-HIYRGTPR 189          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.285e-30
Identity = 76/176 (43.18%), Postives = 104/176 (59.09%), Query Frame = 1
Query:  406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFV-------PIELGIPSKQPT--NYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +LWHACAGP+VSLP  G+ VVY PQGH     A      +  +     LPP + C++ +V + AD  TDEVYA++ L+      +++           +E G   ++    + FCKTLTASDTSTHGGFSVPRRAAE  FP LD     P+QEL+A+DLH  +W  + ++ R  P+
Sbjct:   82 DLWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGGIRGEVAVA----LPPHVACRVVDVELCADAATDEVYARLALRAEGEVFERNLHGGGIEREDDMEDGDEERKSRMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFR-HIYRGQPR 252          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.290e-30
Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 1
Query:  391 KCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--PS-------KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            K L+ +LWHACAG +V +P++ + V YF QGH+E   A      D H P    +PP ++C++ +V   AD ETDEV+A++TL PL P    D      LG+  PS       K+    F KTLT SD +  GGFSVPR  AE +FP LD+S +PP Q +IA+D+H   W+ + ++ R  P+
Sbjct:    5 KSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP----DFHAPR---VPPLILCRVVSVKFLADAETDEVFAKITLLPL-PGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFR-HIYRGTPR 176          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.735e-30
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870
            +LW  CAGPL  +P +G +V YFPQG+ E V A+T +E++   P   +LP +L C++  + +  +  +DE YA++TL P     + P + ++ F P+          N F K LTASD S +G FSVP++ A +  P LD S   PAQEL+A DLH  +W
Sbjct:   27 QLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQP-ICDLPSKLQCRVIAIHLKVENNSDETYAKITLMPDTTQVVIPTQNENQFRPL---------VNSFTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQW 176          

HSP 2 Score: 38.891 bits (89), Expect = 8.735e-30
Identity = 30/102 (29.41%), Postives = 50/102 (49.02%), Query Frame = 2
Query:  875 FRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ-GQFLPNF 1177
            FRH +RG PQRH LT G +   ++K+L+ G+   F  G +       IRRA   Q   P+ ++S + +  G +          +  F V + P+  QF+ ++
Sbjct:  178 FRHSYRGTPQRHLLTTGWNEFTTSKKLVKGDVIVFVRG-ETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVI-ASAKHAFDNQCMFIVVYKPRSSQFIVSY 277          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFN_ORYSJ (Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.129e-29
Identity = 81/190 (42.63%), Postives = 106/190 (55.79%), Query Frame = 1
Query:  367 QQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQK--------DTFVPIELGIPSKQPT--NYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            ++  EG    +  ELWHACAGP V+LP  G+ +VY PQ H    A     EV         +PP + C++  V + AD  TDEVYA++ L       Q+        D    +E     K+P   + FCKTLTASDTSTHGGFSVPRRAAE  FP LD+    P+QELIA DLH  +W+ + ++ R  P+
Sbjct:   10 EEAEEGAAAAVCGELWHACAGPGVALPRRGSALVYLPQAHL--AADGGGGEVPP--AGAAAVPPHVACRVVGVELRADAATDEVYARLALVAEGEMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFR-HIYRGQPR 194          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.744e-29
Identity = 70/182 (38.46%), Postives = 103/182 (56.59%), Query Frame = 1
Query:  388 NKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIP-NYPN--LPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQ------KDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +KCL+ +LWHACAG +V +P V ++V YFPQGH+E            H P  +P   +P  ++C++  V   AD +TDEV+A++ L P+   EQ       D           ++    F KTLT SD +  GGFSVPR  AE +FP LD+S  PP Q ++A+D+H V W+ + ++ R  P+
Sbjct:   17 DKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHA--------QGHGPVEFPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFR-HIYRGTPR 189          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.354e-28
Identity = 75/187 (40.11%), Postives = 108/187 (57.75%), Query Frame = 1
Query:  379 EGDNK-CLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSK----------QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            EGD    ++S+LW ACAG + S+P VG  V YFPQGH+EQ +A  +        +   +PP + C++  V   AD E+DEV+A++ L PL P    D  V +     ++          +PT+ F KTLT SD +  GGFSVPR  AE +FP LD+S +PP Q + A+D+H VEW  + ++ R  P+
Sbjct:   12 EGDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDL-------SSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPG---DAVVDVGEAAAAEARREEENSRPRPTS-FAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFR-HIYRGTPR 186          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.354e-28
Identity = 75/187 (40.11%), Postives = 108/187 (57.75%), Query Frame = 1
Query:  379 EGDNK-CLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSK----------QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            EGD    ++S+LW ACAG + S+P VG  V YFPQGH+EQ +A  +        +   +PP + C++  V   AD E+DEV+A++ L PL P    D  V +     ++          +PT+ F KTLT SD +  GGFSVPR  AE +FP LD+S +PP Q + A+D+H VEW  + ++ R  P+
Sbjct:   12 EGDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDL-------SSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPG---DAVVDVGEAAAAEARREEENSRPRPTS-FAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFR-HIYRGTPR 186          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.075e-28
Identity = 69/183 (37.70%), Postives = 106/183 (57.92%), Query Frame = 1
Query:  382 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--------PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            G  K L+ +LWHACAG +V +P + ++V YFPQGH+E      +        N P +PP ++C++  +   AD E+DEV+A++ L PL  +E    +V  E G          + + T  F KTLT SD +  GGFSVPR  AE +FP LD++ +PP Q ++A+D+H   W+ + ++ R  P+
Sbjct:   11 GTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVD------FGNLP-IPPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDE----YVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFR-HIYRGTPR 181          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 6.850e-28
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +G    +  +LW  CAGPL  +P +G +V YFPQGH E V A+T +E++   P   + P +L C++  + +  +  +DE YA++TL P     + P + ++ F P+          N F K LTASDTS HGGFSVP++ A +  P LD S   P QE++A DLH  +W  +     TA +
Sbjct:   18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQP-ICDFPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNQNQFRPL---------VNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQR 188          
The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFV_ORYSJ2.515e-3037.63Auxin response factor 22 OS=Oryza sativa subsp. ja... [more]
ARFC_ORYSJ3.285e-3043.18Auxin response factor 3 OS=Oryza sativa subsp. jap... [more]
ARFJ_ARATH4.290e-3041.99Auxin response factor 10 OS=Arabidopsis thaliana G... [more]
ARFO_ARATH8.735e-3040.00Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFN_ORYSJ2.129e-2942.63Auxin response factor 14 OS=Oryza sativa subsp. ja... [more]
ARFR_ORYSJ4.744e-2938.46Auxin response factor 18 OS=Oryza sativa subsp. ja... [more]
ARFJ_ORYSJ2.354e-2840.11Auxin response factor 10 OS=Oryza sativa subsp. ja... [more]
ARFJ_ORYSI2.354e-2840.11Auxin responsive factor 10 OS=Oryza sativa subsp. ... [more]
ARFP_ARATH3.075e-2837.70Auxin response factor 16 OS=Arabidopsis thaliana G... [more]
ARFN_ARATH6.850e-2837.57Putative auxin response factor 14 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bp
CTGTCATAGGGCGACAAAATTTATTAATTAAAAAAAGAAAAAAAGAGAAG
AAAAGCTCCTTCTCCGCTCCCATCCCATGGCGATCTCTCAGAAAAGAGGC
AAATGTTGTTGCACTGGGAGCTTTTTACTTAGTTTCTGAGAGAAAGTAGA
GCACATCCATGGATTTGGGTTTGGTTTGATCTTGATTTTGATTTGCACAG
ATGGTGTGAATTGCAAGACCGAGATTGAATTGAAGATGAGCGATATAAGT
TAGGTCTTTAGTATTTTATAATTAAATTATATGTTTCTGTCGTTTAAAAA
ATTAAAAAAATAATAAAAGCAATATAAAAGTGTGAGTGAATGAAGCTTTC
AACATCAGGGCTGTGTCAACAGGGTCATGAAGGGGATAATAAGTGTTTGA
ATTCGGAGCTATGGCACGCCTGTGCTGGGCCGTTGGTGTCCCTACCTACG
GTGGGCACCCGTGTGGTTTACTTCCCTCAGGGGCATAGCGAACAGGTAGC
TGCCACAACTAATAAAGAAGTTGATAGCCATATTCCCAATTACCCGAACT
TGCCACCGCAGTTGATATGCCAACTTCACAATGTCACTATGCATGCTGAT
GTTGAAACGGATGAAGTGTATGCGCAAATGACTCTTCAGCCTTTGTCGCC
GGAAGAGCAGAAGGATACATTTGTTCCCATCGAATTGGGAATTCCAAGCA
AGCAGCCCACAAATTATTTCTGCAAGACTTTAACCGCAAGTGATACTAGT
ACACATGGAGGGTTTTCTGTTCCTCGTCGTGCTGCCGAGAAAGTCTTCCC
TTCGCTGGATTTCTCACTGCAACCACCAGCTCAGGAACTCATTGCAAGGG
ATCTCCATGATGTTGAGTGGGAAGTTCAGGCATATCTTTCGAGGACAGCC
CCAAAGGCATCCTCTCACCAAGGGCTGAAGTGTGGTTGTTAGTGCCAAAA
GACTAATTGCTGGGGAATTCTGTTCTTTTTTTTTGGGATGAAAAAAAATC
ACCTTCTTTTGGGAAATTCGCCGTGCAATCCCCCCACAACTGGTATGCCC
TACTCTGGTTTTGTCCCGTGAAAACTTGCCCATTGGAACTCTAACCTGCT
GCACCTCCAGGCCCTGCCCACCAAAAATTTGTTTTACAGTTTTTTTTAAC
CCCCAGGGGCAATTCCTCCCAAATTTTTTAAACACCCGCCACAAAAATAT
TCAAAACAATTTTTTTCCCCACAGGTGTTTTCTTGTGGGGAATTCGGTGT
TTTCTGAAAGCTCTTTTTTTGGAAGAGCAGAAAAAAACAACACACCCGTT
TCTCGAAGGAACACCATGAGGGGTGAAACACA
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