DY262806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 2.515e-30 Identity = 70/186 (37.63%), Postives = 105/186 (56.45%), Query Frame = 1 Query: 373 GHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEE----QKDTFVPI----ELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 G + +CL+ +LWHACAG +V +P +RV YF QGH+E + LPP ++C++ V AD ++DEVYA++ L P++P E + D P+ + PS + F KTLT SD + GGFSVPR AE +FP LD+ PP Q ++A+D+H V W+ + ++ R P+ Sbjct: 5 GEVEEVRCLDPQLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRALPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFR-HIYRGTPR 189
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.285e-30 Identity = 76/176 (43.18%), Postives = 104/176 (59.09%), Query Frame = 1 Query: 406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFV-------PIELGIPSKQPT--NYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +LWHACAGP+VSLP G+ VVY PQGH A + + LPP + C++ +V + AD TDEVYA++ L+ +++ +E G ++ + FCKTLTASDTSTHGGFSVPRRAAE FP LD P+QEL+A+DLH +W + ++ R P+ Sbjct: 82 DLWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGGIRGEVAVA----LPPHVACRVVDVELCADAATDEVYARLALRAEGEVFERNLHGGGIEREDDMEDGDEERKSRMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFR-HIYRGQPR 252
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 4.290e-30 Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 1 Query: 391 KCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--PS-------KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 K L+ +LWHACAG +V +P++ + V YF QGH+E A D H P +PP ++C++ +V AD ETDEV+A++TL PL P D LG+ PS K+ F KTLT SD + GGFSVPR AE +FP LD+S +PP Q +IA+D+H W+ + ++ R P+ Sbjct: 5 KSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP----DFHAPR---VPPLILCRVVSVKFLADAETDEVFAKITLLPL-PGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFR-HIYRGTPR 176
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 8.735e-30 Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 1 Query: 406 ELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870 +LW CAGPL +P +G +V YFPQG+ E V A+T +E++ P +LP +L C++ + + + +DE YA++TL P + P + ++ F P+ N F K LTASD S +G FSVP++ A + P LD S PAQEL+A DLH +W Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQP-ICDLPSKLQCRVIAIHLKVENNSDETYAKITLMPDTTQVVIPTQNENQFRPL---------VNSFTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQW 176 HSP 2 Score: 38.891 bits (89), Expect = 8.735e-30 Identity = 30/102 (29.41%), Postives = 50/102 (49.02%), Query Frame = 2 Query: 875 FRHIFRGQPQRHPLTKG*SVVVSAKRLIAGEFCSFFLG*KKITFFWEIRRAIPPQLVCPTLVLSRENLPIGTLTCCTSRPCPPKICFTVFFNPQ-GQFLPNF 1177 FRH +RG PQRH LT G + ++K+L+ G+ F G + IRRA Q P+ ++S + + G + + F V + P+ QF+ ++ Sbjct: 178 FRHSYRGTPQRHLLTTGWNEFTTSKKLVKGDVIVFVRG-ETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVI-ASAKHAFDNQCMFIVVYKPRSSQFIVSY 277
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFN_ORYSJ (Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 2.129e-29 Identity = 81/190 (42.63%), Postives = 106/190 (55.79%), Query Frame = 1 Query: 367 QQGHEGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQK--------DTFVPIELGIPSKQPT--NYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 ++ EG + ELWHACAGP V+LP G+ +VY PQ H A EV +PP + C++ V + AD TDEVYA++ L Q+ D +E K+P + FCKTLTASDTSTHGGFSVPRRAAE FP LD+ P+QELIA DLH +W+ + ++ R P+ Sbjct: 10 EEAEEGAAAAVCGELWHACAGPGVALPRRGSALVYLPQAHL--AADGGGGEVPP--AGAAAVPPHVACRVVGVELRADAATDEVYARLALVAEGEMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFR-HIYRGQPR 194
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 4.744e-29 Identity = 70/182 (38.46%), Postives = 103/182 (56.59%), Query Frame = 1 Query: 388 NKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIP-NYPN--LPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQ------KDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +KCL+ +LWHACAG +V +P V ++V YFPQGH+E H P +P +P ++C++ V AD +TDEV+A++ L P+ EQ D ++ F KTLT SD + GGFSVPR AE +FP LD+S PP Q ++A+D+H V W+ + ++ R P+ Sbjct: 17 DKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHA--------QGHGPVEFPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFR-HIYRGTPR 189
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3) HSP 1 Score: 127.102 bits (318), Expect = 2.354e-28 Identity = 75/187 (40.11%), Postives = 108/187 (57.75%), Query Frame = 1 Query: 379 EGDNK-CLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSK----------QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 EGD ++S+LW ACAG + S+P VG V YFPQGH+EQ +A + + +PP + C++ V AD E+DEV+A++ L PL P D V + ++ +PT+ F KTLT SD + GGFSVPR AE +FP LD+S +PP Q + A+D+H VEW + ++ R P+ Sbjct: 12 EGDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDL-------SSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPG---DAVVDVGEAAAAEARREEENSRPRPTS-FAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFR-HIYRGTPR 186
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 2.354e-28 Identity = 75/187 (40.11%), Postives = 108/187 (57.75%), Query Frame = 1 Query: 379 EGDNK-CLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSK----------QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 EGD ++S+LW ACAG + S+P VG V YFPQGH+EQ +A + + +PP + C++ V AD E+DEV+A++ L PL P D V + ++ +PT+ F KTLT SD + GGFSVPR AE +FP LD+S +PP Q + A+D+H VEW + ++ R P+ Sbjct: 12 EGDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDL-------SSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPG---DAVVDVGEAAAAEARREEENSRPRPTS-FAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFR-HIYRGTPR 186
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 3.075e-28 Identity = 69/183 (37.70%), Postives = 106/183 (57.92%), Query Frame = 1 Query: 382 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGI--------PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 G K L+ +LWHACAG +V +P + ++V YFPQGH+E + N P +PP ++C++ + AD E+DEV+A++ L PL +E +V E G + + T F KTLT SD + GGFSVPR AE +FP LD++ +PP Q ++A+D+H W+ + ++ R P+ Sbjct: 11 GTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVD------FGNLP-IPPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDE----YVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFR-HIYRGTPR 181
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 6.850e-28 Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +G + +LW CAGPL +P +G +V YFPQGH E V A+T +E++ P + P +L C++ + + + +DE YA++TL P + P + ++ F P+ N F K LTASDTS HGGFSVP++ A + P LD S P QE++A DLH +W + TA + Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQP-ICDFPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNQNQFRPL---------VNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQR 188 The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bpback to top |