DY262806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 8.946e-28 Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 1 Query: 382 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 G +C++ +LW ACAG + ++P VG V YFPQGH+E E+ + +P + C++ +V AD +TDEV+A++ L PL E D + F KTLT SD + GGFSVPR AE +FP LD++ PP Q ++A+D+H V W + ++ R P+ Sbjct: 13 GAERCVDRQLWLACAGGMCTVPPVGAAVYYFPQGHAEHALGLAAPELSA-----ARVPALVPCRVASVRYMADPDTDEVFARIRLVPLRAAEDGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVVAKDVHGVAWNFR-HIYRGTPR 181
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 1.993e-27 Identity = 70/169 (41.42%), Postives = 96/169 (56.80%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870 +G + +LW CAGPL +P +G +V YFPQGH E V A+T +E++ PN +LP +L C++ + + + +DE Y ++TL P + P E ++ F PI N F K LTASDTS G FSVP + A + P LD S PAQELIA DLH +W Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNC-DLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTTQVVIPTENENQFRPI---------VNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQW 176
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.930e-22 Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 1 Query: 409 LWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDT----FVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +W ACAG V +P + +RV YFPQGH E + P+ + C + ++ + AD TDEV+A + LQP++ ++ T F + + F K LT SD + GGFSVPR A+ VFP L+F + PP Q+L D+H W+ + ++ R P+ Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPL--------LSTLPSSTSPVPCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFR-HIYRGTPR 180
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 7.335e-22 Identity = 62/170 (36.47%), Postives = 85/170 (50.00%), Query Frame = 1 Query: 409 LWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPI----ELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906 +W ACA PL +P VGT+V YFP+GH+EQ A + P+ +C + V + AD T E YA ++L PL + P EL Q Y+ K LT SD + GGFSVPR A+ +FP+L+ PP Q L DL WE + ++ R P+ Sbjct: 28 VWLACAAPLSRIPVVGTQVSYFPEGHAEQCPAPLPDPL-------PSAHRFFLCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRYYAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFR-HIYRGTPR 189
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: Y7833_ORYSJ (B3 domain-containing protein Os07g0183300/Os07g0183600 OS=Oryza sativa subsp. japonica GN=Os07g0183300/Os07g0183600 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11 Identity = 56/169 (33.14%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 379 EGDNKCLNSELWHACAGPLVS-LPTVGTRVVYFPQGHSEQVAATTNKEVDS-HIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPS--------KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDL 855 +GD ++ +W ACA P LP VG+ V YF GH+EQ ++ +P P +C + V + AD T+E YA +TL P++ + VP L P+ +Q YF KTL +SD F+VP A+ VFP L + Q LI +DL Sbjct: 11 DGDG-IVDRAMWLACAAPNSGRLPAVGSMVFYFVDGHAEQFCQFPAPLLEQLAVPG----PRVFLCTVAAVRLRADALTNEAYADITLDPVADHD-----VPRLLPAPAPAAAAGGQQQQLRYFVKTLMSSDAEYRDRFAVPMDVAKDVFPPLVDA--KAVQPLIVKDL 167 The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bpback to top |