DY262806

Overview
NameDY262806
Unique NameDY262806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1332
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.946e-28
Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  382 GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            G  +C++ +LW ACAG + ++P VG  V YFPQGH+E        E+ +       +P  + C++ +V   AD +TDEV+A++ L PL   E  D            +    F KTLT SD +  GGFSVPR  AE +FP LD++  PP Q ++A+D+H V W  + ++ R  P+
Sbjct:   13 GAERCVDRQLWLACAGGMCTVPPVGAAVYYFPQGHAEHALGLAAPELSA-----ARVPALVPCRVASVRYMADPDTDEVFARIRLVPLRAAEDGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVVAKDVHGVAWNFR-HIYRGTPR 181          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.993e-27
Identity = 70/169 (41.42%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  379 EGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQP-----LSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEW 870
            +G    +  +LW  CAGPL  +P +G +V YFPQGH E V A+T +E++   PN  +LP +L C++  + +  +  +DE Y ++TL P     + P E ++ F PI          N F K LTASDTS  G FSVP + A +  P LD S   PAQELIA DLH  +W
Sbjct:   18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNC-DLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTTQVVIPTENENQFRPI---------VNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQW 176          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.930e-22
Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  409 LWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDT----FVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +W ACAG  V +P + +RV YFPQGH E             +   P+    + C + ++ + AD  TDEV+A + LQP++ ++   T    F   +  +        F K LT SD +  GGFSVPR  A+ VFP L+F + PP Q+L   D+H   W+ + ++ R  P+
Sbjct:   20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPL--------LSTLPSSTSPVPCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFR-HIYRGTPR 180          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 7.335e-22
Identity = 62/170 (36.47%), Postives = 85/170 (50.00%), Query Frame = 1
Query:  409 LWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPI----ELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWEVQAYLSRTAPK 906
            +W ACA PL  +P VGT+V YFP+GH+EQ  A     +       P+     +C +  V + AD  T E YA ++L PL  +       P     EL     Q   Y+ K LT SD +  GGFSVPR  A+ +FP+L+    PP Q L   DL    WE + ++ R  P+
Sbjct:   28 VWLACAAPLSRIPVVGTQVSYFPEGHAEQCPAPLPDPL-------PSAHRFFLCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRYYAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFR-HIYRGTPR 189          
BLAST of DY262806 vs. ExPASy Swiss-Prot
Match: Y7833_ORYSJ (B3 domain-containing protein Os07g0183300/Os07g0183600 OS=Oryza sativa subsp. japonica GN=Os07g0183300/Os07g0183600 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11
Identity = 56/169 (33.14%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  379 EGDNKCLNSELWHACAGPLVS-LPTVGTRVVYFPQGHSEQVAATTNKEVDS-HIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPS--------KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDL 855
            +GD   ++  +W ACA P    LP VG+ V YF  GH+EQ        ++   +P     P   +C +  V + AD  T+E YA +TL P++  +     VP  L  P+        +Q   YF KTL +SD      F+VP   A+ VFP L  +     Q LI +DL
Sbjct:   11 DGDG-IVDRAMWLACAAPNSGRLPAVGSMVFYFVDGHAEQFCQFPAPLLEQLAVPG----PRVFLCTVAAVRLRADALTNEAYADITLDPVADHD-----VPRLLPAPAPAAAAGGQQQQLRYFVKTLMSSDAEYRDRFAVPMDVAKDVFPPLVDA--KAVQPLIVKDL 167          
The following BLAST results are available for this feature:
BLAST of DY262806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ARFH_ORYSJ8.946e-2837.14Auxin response factor 8 OS=Oryza sativa subsp. jap... [more]
ARFW_ARATH1.993e-2741.42Putative auxin response factor 23 OS=Arabidopsis t... [more]
ARFQ_ARATH1.930e-2234.12Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
ARFM_ORYSJ7.335e-2236.47Auxin response factor 13 OS=Oryza sativa subsp. ja... [more]
Y7833_ORYSJ2.002e-1133.14B3 domain-containing protein Os07g0183300/Os07g018... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262806 ID=DY262806; Name=DY262806; organism=Citrus clementina; type=EST; length=1332bp
CTGTCATAGGGCGACAAAATTTATTAATTAAAAAAAGAAAAAAAGAGAAG
AAAAGCTCCTTCTCCGCTCCCATCCCATGGCGATCTCTCAGAAAAGAGGC
AAATGTTGTTGCACTGGGAGCTTTTTACTTAGTTTCTGAGAGAAAGTAGA
GCACATCCATGGATTTGGGTTTGGTTTGATCTTGATTTTGATTTGCACAG
ATGGTGTGAATTGCAAGACCGAGATTGAATTGAAGATGAGCGATATAAGT
TAGGTCTTTAGTATTTTATAATTAAATTATATGTTTCTGTCGTTTAAAAA
ATTAAAAAAATAATAAAAGCAATATAAAAGTGTGAGTGAATGAAGCTTTC
AACATCAGGGCTGTGTCAACAGGGTCATGAAGGGGATAATAAGTGTTTGA
ATTCGGAGCTATGGCACGCCTGTGCTGGGCCGTTGGTGTCCCTACCTACG
GTGGGCACCCGTGTGGTTTACTTCCCTCAGGGGCATAGCGAACAGGTAGC
TGCCACAACTAATAAAGAAGTTGATAGCCATATTCCCAATTACCCGAACT
TGCCACCGCAGTTGATATGCCAACTTCACAATGTCACTATGCATGCTGAT
GTTGAAACGGATGAAGTGTATGCGCAAATGACTCTTCAGCCTTTGTCGCC
GGAAGAGCAGAAGGATACATTTGTTCCCATCGAATTGGGAATTCCAAGCA
AGCAGCCCACAAATTATTTCTGCAAGACTTTAACCGCAAGTGATACTAGT
ACACATGGAGGGTTTTCTGTTCCTCGTCGTGCTGCCGAGAAAGTCTTCCC
TTCGCTGGATTTCTCACTGCAACCACCAGCTCAGGAACTCATTGCAAGGG
ATCTCCATGATGTTGAGTGGGAAGTTCAGGCATATCTTTCGAGGACAGCC
CCAAAGGCATCCTCTCACCAAGGGCTGAAGTGTGGTTGTTAGTGCCAAAA
GACTAATTGCTGGGGAATTCTGTTCTTTTTTTTTGGGATGAAAAAAAATC
ACCTTCTTTTGGGAAATTCGCCGTGCAATCCCCCCACAACTGGTATGCCC
TACTCTGGTTTTGTCCCGTGAAAACTTGCCCATTGGAACTCTAACCTGCT
GCACCTCCAGGCCCTGCCCACCAAAAATTTGTTTTACAGTTTTTTTTAAC
CCCCAGGGGCAATTCCTCCCAAATTTTTTAAACACCCGCCACAAAAATAT
TCAAAACAATTTTTTTCCCCACAGGTGTTTTCTTGTGGGGAATTCGGTGT
TTTCTGAAAGCTCTTTTTTTGGAAGAGCAGAAAAAAACAACACACCCGTT
TCTCGAAGGAACACCATGAGGGGTGAAACACA
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