DY262816

Overview
NameDY262816
Unique NameDY262816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURTA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 80/219 (36.53%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  ++        VVK+QI AGGRG G       GGV + K  ++V + A ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLDQVREYANQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSTGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q+        VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURP6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 668) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q+        VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURP1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 1710b) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q+        VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURP0 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 1106a) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q+        VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURMS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain SAVP1) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q+        VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q+        VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURM9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain NCTC 10229) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q+        VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURM7 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain NCTC 10247) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.105e-30
Identity = 81/219 (36.99%), Postives = 125/219 (57.08%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q+        VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L E +PL  T   +++
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVI 210
[Close]
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=sucC PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.402e-30
Identity = 79/221 (35.75%), Postives = 117/221 (52.94%), Query Frame = 1 
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQL 918
            +NIHEYQ   ++  +G+++ KG+A+    + + A +         VVKSQI AGGRG G FK   +G KGGV + K  EEV+  A +MLG  LVT QTGP GK V+++Y+ +   +  E Y ++++DR T+    +  ++GG +IED+A   P  I+   +D   GI       V   L         A   V +LY  F   D  +LE +PL  T   +L
Sbjct:    1 MNIHEYQAKAVLQPFGVSLSKGVAILKATDAEAAAKQL--GGPIWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIEEVKQYAAEMLGATLVTIQTGPAGKQVNRLYIEDGSDIEKEFYLSLLVDRVTSRISFVVSTEGGMNIEDVAHDTPEKIISFSVDPATGIMGHHGRTVAKALGLTGDLAKQAERLVAQLYAAFISKDMEMLEINPLVVTKQGEL 219

HSP 2 Score: 28.8758 bits (63), Expect = 1.402e-30
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:  981 ALREPTQEDPREVAAGKADLN 1043
            ALR+ T+ED +E+ A K DLN
Sbjct:  241 ALRDETEEDAKEIEASKYDLN 261
The following BLAST results are available for this feature:
BLAST of DY262816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_BURTA1.105e-3036.53Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURPS1.105e-3036.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP61.105e-3036.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP11.105e-3036.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP01.105e-3036.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURMS1.105e-3036.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURMA1.105e-3036.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM91.105e-3036.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM71.105e-3036.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOPB1.402e-3035.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262816 ID=DY262816; Name=DY262816; organism=Citrus clementina; type=EST; length=1311bp
AACGAAATAAAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGGGT
CAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCAGT
AAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACG
TACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATT
GTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGC
AACAGCAGCTCCGCCGTCTCAACATCCACGAATATCAGGGGGCTGAGTTG
ATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGT
TGATGAAGTCAAAAAGGCTATTCAGGATGCTTTTCCCGATCATAAGGAGC
TGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTT
AAGTCTGGTCTTAAGGGTGGGGTTCACATCGTTAAGAAAGAAGAAGTTGA
AGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTG
GTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCA
CTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGG
CCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTG
CTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAAT
GGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCACCCAA
GGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAAC
TCTTTTGTGAGAGTGACTGCACATTATTGGAAAATCATCCTCTAGCAGAG
ACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCATAGTTGAATTTTGATGA
TAATGCTGCCTTCCGTCAGAAAGAAAATTGGCTCTGCGTGAACCAACGCA
AGAAGATCCTCGAGAGGTGGCTGCTGGNAAAGCTGATTTAAATACTTGGG
CTGGGAAGGGAAAATGGGTGGATGGTGAAGGGTGCAGGAATAATTAGGGC
AAAAATGGAATGTTGGGGGGAAAGGCTTCGGAAGGGCCAGGGGGTGGGGG
CAATTAAAATTTTGACATTTCGAATGAAAAAGCAAAAGAAACCTTTGGGG
AAAAAAATTTTGGAAGAGAAAAATAGGGAAAAGGGGGAGGAAAAAAACCC
CCGGGGGGAAATATTGTCTCGAGGGGCGGGGCTAAAAAAAAAGGAGGTTC
CCCCCCAACAA
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