DY262816
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_IDILO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Idiomarina loihiensis GN=sucC PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.410e-21 Identity = 71/217 (32.72%), Postives = 114/217 (52.53%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLENHPLAET 903 +N+HEYQG +L ++G+ V +G A + DE +A + D VVK Q+ AGGRG GGV +VK ++V A + LG+ LVT QT +G+ V+K+ + + +E+Y ++DR + + + ++GG IE +AE+ P I+K ID G + L K+ D ++Q K++ K+F + D LLE +PL T Sbjct: 1 MNLHEYQGKQLFKEFGLPVSEGYACDTADEAVEAAKRIGGDI--WVVKCQVHAGGRGKA-------GGVKLVKSLDDVRAFAEQWLGKNLVTFQTDEKGQPVAKILVESCTDIADELYLGAVVDRASRKIVFMASTEGGVEIETVAEETPEKILKAEIDPTVGAQPYQGRE----LGFKLGLTPDQVKQFTKVFMGLAKMFEQYDLALLEINPLVIT 204 HSP 2 Score: 24.6386 bits (52), Expect = 3.410e-21 Identity = 14/36 (38.89%), Postives = 20/36 (55.56%), Query Frame = 3 Query: 984 LREPTQEDPREVAAGKADLNTWAGKGK---WVDGEG 1082 + +P+Q+D RE A K +LN A G V+G G Sbjct: 232 MHDPSQDDAREAEAAKWELNYVALDGNIGCMVNGAG 267
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=sucC PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.562e-21 Identity = 83/283 (29.33%), Postives = 122/283 (43.11%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLVXXXXXXXXXXXXXXRQKENWLCVNQXXXXXXXXXXXXXXXXXXXXXXN-GWMVKGAGIIRAKME 1110 +N HEYQ +L A+YGI VP G +S DE A + + +VK+QI AGGRG GGV K +EV+ A MLG + T Q+ V+ V + E + E+Y ++++DR T I S+GG IE +A + P I + +D G+ + L + N + + LY+LF + D +L+E +PLA S L R KE ++ N G MV GAG+ A M+ Sbjct: 1 MNFHEYQAKQLFAEYGIPVPAGRIASSADEAVTAAKSL--GNGPWMVKAQIHAGGRGKA-------GGVKFCKTTDEVKQAAATMLGTKMATYQSAGVALPVNLVLVTEAGEITKELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGFHLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFRHKELAAMRDKTQEDETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMD 274
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain M12) GN=sucC PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.562e-21 Identity = 83/283 (29.33%), Postives = 122/283 (43.11%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLVXXXXXXXXXXXXXXRQKENWLCVNQXXXXXXXXXXXXXXXXXXXXXXN-GWMVKGAGIIRAKME 1110 +N HEYQ +L A+YGI VP G +S DE A + + +VK+QI AGGRG GGV K +EV+ A MLG + T Q+ V+ V + E + E+Y ++++DR T I S+GG IE +A + P I + +D G+ + L + N + + LY+LF + D +L+E +PLA S L R KE ++ N G MV GAG+ A M+ Sbjct: 1 MNFHEYQAKQLFAEYGIPVPAGRIASSADEAVTAAKSL--GNGPWMVKAQIHAGGRGKA-------GGVKFCKTTDEVKQAAATMLGTKMATYQSAGVALPVNLVLVTEAGEITKELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGFHLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFRHKELAAMRDKTQEDETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMD 274
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_XYLFA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa GN=sucC PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.562e-21 Identity = 83/283 (29.33%), Postives = 122/283 (43.11%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLVXXXXXXXXXXXXXXRQKENWLCVNQXXXXXXXXXXXXXXXXXXXXXXN-GWMVKGAGIIRAKME 1110 +N HEYQ +L A+YGI VP G +S DE A + + +VK+QI AGGRG GGV K +EV+ A MLG + T Q+ V+ V + E + E+Y ++++DR T I S+GG IE +A + P I + +D G+ + L + N + + LY+LF + D +L+E +PLA S L R KE ++ N G MV GAG+ A M+ Sbjct: 1 MNFHEYQAKQLFAEYGIPVPAGRIASSADEAVTAAKSL--GNGPWMVKAQIHAGGRGKA-------GGVKFCKTTDEVKQAAAAMLGTKMATYQSAGVALPVNLVLVTEAGEITKELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGFHLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFRHKELAAMRDKTQEDETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMD 274
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_XYLF2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xylella fastidiosa (strain M23) GN=sucC PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.562e-21 Identity = 83/283 (29.33%), Postives = 122/283 (43.11%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLVXXXXXXXXXXXXXXRQKENWLCVNQXXXXXXXXXXXXXXXXXXXXXXN-GWMVKGAGIIRAKME 1110 +N HEYQ +L A+YGI VP G +S DE A + + +VK+QI AGGRG GGV K +EV+ A MLG + T Q+ V+ V + E + E+Y ++++DR T I S+GG IE +A + P I + +D G+ + L + N + + LY+LF + D +L+E +PLA S L R KE ++ N G MV GAG+ A M+ Sbjct: 1 MNFHEYQAKQLFAEYGIPVPAGRIASSADEAVTAAKSL--GNGPWMVKAQIHAGGRGKA-------GGVKFCKTTDEVKQAAATMLGTKMATYQSAGVALPVNLVLVTEAGEITKELYLSVLVDRGTRSITYIASSEGGVDIEHVAAETPEKIQTLNVDFVEGLQPYQGRDIGFHLGLEAKQVNQLSKIMISLYQLFNDKDLSLIELNPLAILSNGDLYALDGKINSDDNATFRHKELAAMRDKTQEDETEVLASENDLNYVTMDGNIGCMVNGAGLAMATMD 274
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_DESK1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=sucC PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.562e-21 Identity = 64/217 (29.49%), Postives = 115/217 (53.00%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQL 918 + ++EY+G E+ KYGI P+G+ SV++V KA ++ + +V+KSQ+L GGRGL G+K ++ EE A ++ + +G+ V K+ + E + + E+Y ++ +DR T + + GG IE+LA K+P+ I+++P+D F G + A + L + ++ +YK+ + D L+E +PLA T +L Sbjct: 1 MKLYEYEGKEIARKYGIETPRGILATSVEDVDKAYREL--NTGTVVLKSQVLVGGRGLA---GGVKKASNL---EEALTKARELFSMSI-------KGERVEKILVEEAVCISRELYMSLTVDRATRKLVYLASGMGGVEIEELARKHPDKILRIPVDPFIGYSGYMARHALGFLGLQWDKLGQLDNIMRAMYKIMIDYDAELVEFNPLAYTCDGRL 202
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_XANCB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris (strain B100) GN=sucC PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 4.436e-21 Identity = 68/211 (32.23%), Postives = 100/211 (47.39%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLA 897 +N HEYQ +L+A+YGI VP G ++ DE + +VK+QI AGGRG GGV K ++V+ A KMLG + T QT V+ V + +V E+Y +I++DR T I S+GG IE +A + P +I + +D G+ L + LY+LF + D L+E +PLA Sbjct: 1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTVTYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYRLFNDKDLALVEINPLA 202 HSP 2 Score: 27.7202 bits (60), Expect = 4.436e-21 Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLN--TWAGK-GKWVDGEG 1082 +A+R+ TQED EV A + D+N T G G V+G G Sbjct: 230 VAMRDKTQEDETEVTASELDINYVTMDGNIGCMVNGAG 267
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_THICR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thiomicrospira crunogena (strain XCL-2) GN=sucC PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 4.652e-21 Identity = 69/219 (31.51%), Postives = 109/219 (49.77%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921 +N+HEYQ L +YGI VPKG+ + + ++ A+ D K VVK+QI AG RG GGV +V+ EE E A ++LG L T QT + ++ + + + L + E Y ++M+DR T + + GG IE +AE P I+ V +D G+ ++ L ++ Y+L + D +LLE +PL T+ +LV Sbjct: 1 MNLHEYQAKSLFQQYGIPVPKGVMINDLADLDAALGQI--DSKGWVVKAQIHAGARGKA-------GGVKLVETAEEAEQAASELLGSSLATIQTAGKALPINALLIEQTLDIYQEFYLSLMVDRVTKTHTFVISAAGGMDIELVAEASPEKILSVHVDPTVGLMPYQCREIAFALGLTGTAFKQMASVMQGFYQLALDKDVSLLEINPLVLTAENELV 210
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_XANCP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris GN=sucC PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 5.771e-21 Identity = 68/211 (32.23%), Postives = 100/211 (47.39%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLA 897 +N HEYQ +L+A+YGI VP G ++ DE + +VK+QI AGGRG GGV K ++V+ A KMLG + T QT V+ V + +V E+Y +I++DR T I S+GG IE +A + P +I + +D G+ L + LY+LF + D L+E +PLA Sbjct: 1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYRLFNDKDLALVEINPLA 202 HSP 2 Score: 27.7202 bits (60), Expect = 5.771e-21 Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLN--TWAGK-GKWVDGEG 1082 +A+R+ TQED EV A + D+N T G G V+G G Sbjct: 230 VAMRDKTQEDETEVTASELDINYVTMDGNIGCMVNGAG 267
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_XANC8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sucC PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 5.771e-21 Identity = 68/211 (32.23%), Postives = 100/211 (47.39%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLA 897 +N HEYQ +L+A+YGI VP G ++ DE + +VK+QI AGGRG GGV K ++V+ A KMLG + T QT V+ V + +V E+Y +I++DR T I S+GG IE +A + P +I + +D G+ L + LY+LF + D L+E +PLA Sbjct: 1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYRLFNDKDLALVEINPLA 202 HSP 2 Score: 27.7202 bits (60), Expect = 5.771e-21 Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLN--TWAGK-GKWVDGEG 1082 +A+R+ TQED EV A + D+N T G G V+G G Sbjct: 230 VAMRDKTQEDETEVTASELDINYVTMDGNIGCMVNGAG 267 The following BLAST results are available for this feature:
BLAST of DY262816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262816 ID=DY262816; Name=DY262816; organism=Citrus clementina; type=EST; length=1311bpback to top |