DY262816

Overview
NameDY262816
Unique NameDY262816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_PROAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Propionibacterium acnes GN=sucC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.686e-19
Identity = 70/284 (24.65%), Postives = 132/284 (46.48%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLVXXXXXXXXXXXXXXRQKENWLCVNQXXXXXXXXXXXXXXXXXXXXXXN-GWMVKGAGIIRAKMEC 1113
            ++++EYQ  +L  K+G+ V +G+   + ++  +A   A      + VK+Q+  GGRG         GGV I K   E  + A  +LG  +       +G  V KV + E   +  E YF+I+LDR     + +   +GG  IE LA++ P  + KVP+D  +G+ D  A +++       ++++  +  V KL++ + + D TL+E +P+ +T   +++              RQ ++   V++                      N G +  GAG++ + ++C
Sbjct:    1 MDLYEYQARDLFEKHGVPVLRGIVAETPEQASEAA--AKLGTPVVAVKAQVKVGGRGKA-------GGVKIAKSAAEAAERAEAILGMDI-------KGHTVHKVMVAEGADIAEEYYFSILLDRGERRYLAMCSREGGMDIETLAKERPEALAKVPVDPIDGVDDAKAREILSEAGFPDSEQDAIVPAVLKLWETYRDEDATLVEVNPMIKTGDGRILAIDGKMTVDNNASFRQPDHAGLVDRATTDPLELRAGELGLNYVKLDGNVGVIGNGAGLVMSTLDC 268          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_HAEI8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus influenzae (strain 86-028NP) GN=sucC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.686e-19
Identity = 69/219 (31.51%), Postives = 104/219 (47.49%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +N+HEYQ  +L   YG+ V  G    SV++V   +     D  +   K Q+ AGGRG         GGV +V+  EE    A K LGQ LVT QT   G+ V+++Y  E   +  E Y + ++DR +   + I    GG +IE++A+   +++ KV ID   G       ++   L           +    L +LF E D +L+E +PL  T    LV
Sbjct:    1 MNLHEYQAKQLFEHYGLPVKNGAVCQSVEDVDLVLAQLSGD--KWAAKCQVHAGGRGKA-------GGVKLVQDVEEARAFAEKWLGQRLVTFQTDKLGQPVNQIYFEETCDIDKEFYLSAVVDRASQKVMFIASPAGGMNIEEVAQNSLHLLHKVEIDPLFGGLPYQGRELAFKLGLSGTQNKQFTDIFMGLSRLFLEKDLSLVEVNPLVLTKQGYLV 210          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_SERP5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Serratia proteamaculans (strain 568) GN=sucC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.546e-19
Identity = 69/223 (30.94%), Postives = 108/223 (48.43%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLENHPLAETSGKQLV 921
            +N+HEYQ  +L A+YG+  P G A  +  E ++A           VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ ID   G       +    LA K+      + Q  K++     LF E D  ++E +PL  T    L+
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKI--GSGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAEAWLGKRLVTYQTDALGQPVHQILVEAATDIDKELYLGAVVDRASRRVVFMASTEGGVEIEKVAEETPELIHKMTIDPLAGPQPYQGRE----LAFKLGLTGKQVGQFAKIFMGLATLFLERDLAMVEINPLVVTKQGDLI 210          

HSP 2 Score: 21.557 bits (44), Expect = 6.546e-19
Identity = 14/36 (38.89%), Postives = 20/36 (55.56%), Query Frame = 3
Query:  984 LREPTQEDPREVAAGKADLNTWAGKGK---WVDGEG 1082
            +R+ +QED RE  A + +LN  A  G     V+G G
Sbjct:  232 MRDLSQEDERESRAAQWELNYVALDGNIGCMVNGAG 267          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BEUC1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=sucC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.427e-19
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVV-KSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV--DGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +++ EYQ  ++  K+G+ V  G+   +VDE + A +        +VV K+Q+  GGRG         GGV + +  EE  + A ++LG  +       +G  V +V + E  S+  E YF+++LDR     + +   +GG  IE LA + P  + +V +D   GI    AA++V   G A  VA      + ++KL+ ++   D TL+E +PL  T+  +++
Sbjct:    1 MDLFEYQARDVFEKHGVPVLGGIVATTVDEARAAAETLTSGAGSVVVVKAQVKTGGRGKA-------GGVKLARSPEEAAEAAEQILGMDI-------KGHTVHRVMIAEGASIAEEYYFSVLLDRANRSYLAMASVEGGVEIEQLAVERPEALARVAVDPLVGIDAAKAAEIVAAAGFADDVA--GAVADVIQKLWTVYDAEDATLVEVNPLVRTTDGRVI 206          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_HALMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haloarcula marismortui GN=sucC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.700e-19
Identity = 71/222 (31.98%), Postives = 115/222 (51.80%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV--DGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + +HEYQ  ++ A  GI  P      +VDE   A ++  +P    + +K+Q+  GGRG         GG+ +V+ KEE  + A  ++G  L       +G  VSKV + E +  VNE+Y  + +DR    P+ +  +KGG +IE++AE+ P+ I +  ID   G+    A KVV   G+  +VA  ND    +  LY+L+ + D    E +PL  TS  +++
Sbjct:    1 MRLHEYQAKQVFADAGIPTPASQLAETVDEAVDAAEEIGYP----VAIKAQVHVGGRGKA-------GGIKLVESKEEAREAAEDIIGMDL-------KGYHVSKVLVEEAVDFVNELYVGVTMDRGEGRPVAMVSTKGGVNIEEVAEEDPDAIAREHIDPAFGMHPFQARKVVYEAGVDREVA--NDVASVLTTLYQLWDDRDGADTEINPLMITSDDEVI 202          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_CHLPN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia pneumoniae GN=sucC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.700e-19
Identity = 64/219 (29.22%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEE-VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +++HEYQ  +L+A Y + +P    V+S +E +  I  +  D    VVK Q+ AGGRG         GGV + K    +     K+LG    + QT      V KV +   +++  E Y A+++DRK   P+++    GG  IE++A   P  I+ +P+  +  I      +    +  +    +  ++ +KKL K F E+D +LLE +PL  T   +L+
Sbjct:    1 MHLHEYQAKDLLASYDVPIPPYWVVSSEEEGELLITKSGLD--SAVVKVQVHAGGRGK-------HGGVIVAKSSAGILQAVAKLLGMHFTSNQTADGFLPVEKVLISPLVAIQREYYVAVIMDRKHRCPVLMLSKAGGMDIEEVAHSSPEQILTLPLTSYGHIYSYQLRQATKFMEWEGEVMHQGVQLIKKLAKCFYENDVSLLEINPLVLTLEGELL 210          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_NATPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=sucC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18
Identity = 63/220 (28.64%), Postives = 111/220 (50.45%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + +HEYQ   + A  GI VP+    ++VDE  +A  D  +P    + +K+Q+  GGRG         GG+ +V+  +E  + A ++LG  L       +G  V +V +   +   +E+Y  + +DR    P+ +  ++GG +IE++AE+ P+ IV+  ID   G+    A K         A  ND    + +LY+L+ + D T +E +PL  T   +++
Sbjct:    1 MKLHEYQAKGVFADAGIPVPESTLASTVDEAVEAADDIGYP----VAIKAQVQVGGRGKA-------GGIKLVENADEAREAADEILGMDL-------KGLHVDRVLVEAAVDFTDELYVGVTMDRAAGKPVAMVSTRGGVNIEEVAEEDPDAIVREHIDPAFGMHPFQARKAAFEAGVDRAVANDVASILTQLYELWADKDATEIEVNPLMVTDDDEVI 202          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_CHLMU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia muridarum GN=sucC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.822e-18
Identity = 66/221 (29.86%), Postives = 112/221 (50.68%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA--PKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +++HEYQ  +L+  Y + +P      S+ E + AIQ      +  VVK+Q+ AGGRG         GGV + +  E++     ++L     + QT      V+KV +   + +  E Y AI++DRK   P+I+    GG  IE++AEK P++++K+ +     I       +   +     VADR + I  ++KL + F ++D +LLE +PL  T    L+
Sbjct:    1 MHLHEYQAKDLLTSYQLPIPPYHVATSLSEAEVAIQAE--QWRSGVVKAQVHAGGRGKN-------GGVIVARSPEDLLAATDRLLHMQFSSNQTAGLSLPVNKVLISPLVEIALEYYIAIVIDRKHRCPVIMLSKSGGIDIEEIAEKQPDLLLKIALPSSGKIYAYQLRHIAKFMEWDKLVADRGNHI--IRKLLQCFYDNDASLLEINPLVLTKDGDLI 210          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit beta-2 OS=Archaeoglobus fulgidus GN=sucC2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.822e-18
Identity = 61/212 (28.77%), Postives = 107/212 (50.47%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903
            + +HEYQ  ++ +K+GI V +G    SV++V+   ++      ++V+KSQ+L GGRG      G+K    +   EE  + A +M G +L       +G IV K+Y+ E + +  EMY  + +DR   G   I  S GG  IE++A K+P  I ++ ++   G+ D    +++           +    +K LY++    +  L+E +PL  T
Sbjct:    1 MRLHEYQAKQIFSKHGIRVARGELATSVEDVRGIAEEL---GGKVVLKSQVLVGGRGKA---GGIKKAYSV---EEAVEKAKEMFGSVL-------KGHIVEKIYVEEMIEVQREMYAGLTIDRANKGIAAILSSVGGMDIEEIAVKHPEKIARIAVNPKWGLWDYQIRELLLNSQMPREYWKEVASILKTLYRIMVHYEAELVEINPLVVT 196          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit beta-1 OS=Archaeoglobus fulgidus GN=sucC1 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.166e-18
Identity = 63/213 (29.58%), Postives = 107/213 (50.23%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903
            + +HE+Q  ++ AK+GI VP+G    S +E +K  +        +VVK+QIL GGRG         GGV      EE +++A K+LG  +       +G  V KV + E+L++  E Y   ++D+ +  P +I    GG  +E++A K+P+ I ++  D   G+ D +  K +     +  +     + +KKL  +    +  L E +PLA T
Sbjct:    1 MRLHEHQAKQIFAKHGIRVPRGEVATSPEEAEKIAEKL---GGRVVVKAQILVGGRGKA-------GGVKKANSPEEAKEVAKKILGMTI-------KGHRVEKVLVEEQLNMRKEYYVGYVVDKSSRLPTVIFSRMGGMDVEEIAAKHPDAIHRIYFDPLWGLKDYEVRKALFRAGFEGEEFKQMFDIIKKLVDIAFAYEAELTEINPLAVT 196          

HSP 2 Score: 21.1718 bits (43), Expect = 3.166e-18
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  984 LREPTQEDPREVAAGKADLN 1043
            LRE T+EDP E  A    +N
Sbjct:  223 LREATEEDPLEREARLKGIN 242          
The following BLAST results are available for this feature:
BLAST of DY262816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_PROAC5.686e-1924.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAEI85.686e-1931.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SERP56.546e-1930.94Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BEUC17.427e-1929.28Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALMA9.700e-1931.98Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLPN9.700e-1929.22Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NATPD1.655e-1828.64Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLMU2.822e-1829.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC2_ARCFU2.822e-1828.77Succinyl-CoA ligase [ADP-forming] subunit beta-2 O... [more]
SUCC1_ARCFU3.166e-1829.58Succinyl-CoA ligase [ADP-forming] subunit beta-1 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262816 ID=DY262816; Name=DY262816; organism=Citrus clementina; type=EST; length=1311bp
AACGAAATAAAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGGGT
CAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCAGT
AAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACG
TACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATT
GTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGC
AACAGCAGCTCCGCCGTCTCAACATCCACGAATATCAGGGGGCTGAGTTG
ATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGT
TGATGAAGTCAAAAAGGCTATTCAGGATGCTTTTCCCGATCATAAGGAGC
TGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTT
AAGTCTGGTCTTAAGGGTGGGGTTCACATCGTTAAGAAAGAAGAAGTTGA
AGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTG
GTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCA
CTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGG
CCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTG
CTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAAT
GGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCACCCAA
GGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAAC
TCTTTTGTGAGAGTGACTGCACATTATTGGAAAATCATCCTCTAGCAGAG
ACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCATAGTTGAATTTTGATGA
TAATGCTGCCTTCCGTCAGAAAGAAAATTGGCTCTGCGTGAACCAACGCA
AGAAGATCCTCGAGAGGTGGCTGCTGGNAAAGCTGATTTAAATACTTGGG
CTGGGAAGGGAAAATGGGTGGATGGTGAAGGGTGCAGGAATAATTAGGGC
AAAAATGGAATGTTGGGGGGAAAGGCTTCGGAAGGGCCAGGGGGTGGGGG
CAATTAAAATTTTGACATTTCGAATGAAAAAGCAAAAGAAACCTTTGGGG
AAAAAAATTTTGGAAGAGAAAAATAGGGAAAAGGGGGAGGAAAAAAACCC
CCGGGGGGAAATATTGTCTCGAGGGGCGGGGCTAAAAAAAAAGGAGGTTC
CCCCCCAACAA
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