DY262816

Overview
NameDY262816
Unique NameDY262816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_SALAI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salinispora arenicola (strain CNS-205) GN=sucC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.120e-17
Identity = 68/215 (31.63%), Postives = 106/215 (49.30%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903
            ++++EYQG +L  ++G+ V  G  VA+  E  +AI +       +VVK+Q+  GGRG         GGV + +  +E    A  +LG  +       +G  V KV +     +  E YF+ +LDR     + I    GG  IE +A + P  +VK PID   G+    A +++   G   +V D+  A+E    L+K F   D TL+E +PLA T
Sbjct:    1 MDLYEYQGRDLFERHGLPVLAG-GVATTPEEARAIAERLGGR--VVVKAQVKVGGRGKA-------GGVKLAEGADETVARATDILGMDI-------KGHTVHKVMITVTADVAEEYYFSYLLDRANRTFLCIASVAGGMDIEQVAAETPEKVVKAPIDANTGVDAAMARQIITRAGFPAEVVDQ--AVEVAVDLWKAFVAEDATLVEVNPLART 196          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_CHLSY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=sucC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.075e-17
Identity = 65/212 (30.66%), Postives = 110/212 (51.89%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKG-LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQV-KKLYKLFCESDCTLLENHPL 894
            + +HEYQ  +L+A++GI V  G +AV  V+    A +   P    +VVK+Q+  GGRG         GGV + +   E E +A ++LG  +       +G  V KV + E +S   E+Y + +LDR +   ++I  ++GG  IE++A+  P+ I+K+P     G+ D  A ++   +      +     Q+   LY+ F E D +L+E +PL
Sbjct:    1 MKLHEYQARDLLARFGIPVTGGGVAVTPVEARTIAAEIGGP----VVVKAQVHVGGRGKA-------GGVKLAQTPTEAEQVARQILGMNI-------KGLTVEKVLVAEAVSYKRELYLSAILDRGSKRVMMIASAEGGVEIEEVAKTNPDAIIKIPAHPTMGLLDFQARELAFRIGLNDGKQARQFAQIASALYRAFVECDASLVEINPL 194          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_CHLAA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=sucC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.075e-17
Identity = 65/212 (30.66%), Postives = 110/212 (51.89%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKG-LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQV-KKLYKLFCESDCTLLENHPL 894
            + +HEYQ  +L+A++GI V  G +AV  V+    A +   P    +VVK+Q+  GGRG         GGV + +   E E +A ++LG  +       +G  V KV + E +S   E+Y + +LDR +   ++I  ++GG  IE++A+  P+ I+K+P     G+ D  A ++   +      +     Q+   LY+ F E D +L+E +PL
Sbjct:    1 MKLHEYQARDLLARFGIPVTGGGVAVTPVEARTIAAEIGGP----VVVKAQVHVGGRGKA-------GGVKLAQTPTEAEQVARQILGMNI-------KGLTVEKVLVAEAVSYKRELYLSAILDRGSKRVMMIASAEGGVEIEEVAKTNPDAIIKIPAHPTMGLLDFQARELAFRIGLNDGKQARQFAQIASALYRAFVECDASLVEINPL 194          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_ROSCS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=sucC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.322e-17
Identity = 62/211 (29.38%), Postives = 106/211 (50.24%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQV-KKLYKLFCESDCTLLENHPL 894
            + +HEYQ  +++A+YG+ V  G  VA+     +AI +       +VVK+Q+  GGRG         GGV +    E+ E +AG++LG  +       +G  V KV + E ++   E+Y   ++DR +   +++  ++GG  IE++A   P  IVKV      G+ D  A  +  G+    A +     Q+   LY+ + + D +L E +PL
Sbjct:    1 MKLHEYQARDILARYGVPVTGG-GVATTPAEARAIAEQIGGR--VVVKAQVFVGGRGKA-------GGVKLADTPEQAEQVAGQILGMNI-------KGLTVEKVLVAEAITYEREIYLGAIMDRASRRIVMMASAEGGVEIEEVARTNPEAIVKVAAHPMLGLLDFQARDLAYGIGLTDAKQARQFAQIATALYRAYMDVDASLAEINPL 194          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_CORGL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Corynebacterium glutamicum GN=sucC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 9.079e-17
Identity = 61/221 (27.60%), Postives = 113/221 (51.13%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +++ EYQ  +L   +G+ V KG+  ++ +  +KA ++        VVK+Q+  GGRG         GGV +     +  D A  +LG  +       +G  V++V + +   +  E YF+I+LDR     + +   +GG  IE LA++ P  + KV +D   GI ++ A ++V   G   +VA++   I  + K+++++ E + TL+E +PL  T    ++
Sbjct:    1 MDLFEYQARDLFETHGVPVLKGIVASTPEAARKAAEEI---GGLTVVKAQVKVGGRGKA-------GGVRVAPTSAQAFDAADAILGMDI-------KGHTVNQVMVAQGADIAEEYYFSILLDRANRSYLAMCSVEGGMEIEILAKEKPEALAKVEVDPLTGIDEDKAREIVTAAGFETEVAEK--VIPVLIKIWQVYYEEEATLVEVNPLVLTDDGDVI 202          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_MYCVP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.186e-16
Identity = 62/220 (28.18%), Postives = 108/220 (49.09%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +++ EYQ  EL AK+ +    G    S ++ K   ++     K ++VK+Q+  GGRG    K+G  G  +    E+    A  +LG  +       +G IV K+ + E   +  E Y + +LDR     + +   +GG  IE++A   P  + KVP+D   G+ +  A ++ +   L  +V D   A   + KL+++F + D TL+E +PL  T   Q++
Sbjct:    1 MDLFEYQAKELFAKHNVPTTPGRVTESAEDAKAIAEEI---GKPVMVKAQVKVGGRG----KAG--GVKYAATPEDALTHAQNILGLDI-------KGHIVKKLLVAEASDIAEEYYISFLLDRANRTYLAMCSVEGGMEIEEVAATKPERLAKVPVDAVKGVDEAFAREIAEKGHLPAEVLDA--AAVTIAKLWEVFVKEDATLVEVNPLVRTPDDQIL 202          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_HALLT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=sucC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.549e-16
Identity = 60/220 (27.27%), Postives = 109/220 (49.55%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + +HE+Q   + A  GI VP      +VDE   A+ +  +P      +K+Q+  GGRG         GG+ I   ++E E  A ++LG  L       +G  V ++ + + +  V+E+Y  + +DR    P+++  ++GG +IE++AE+ P+ I +  +D   G+    A KVV           D    +  LY L+ E+D + +E +P+  TS + ++
Sbjct:    1 MKLHEHQAKTIFADAGIPVPDSRLATTVDEALDAVDEIGYP----AAIKAQVHVGGRGKA-------GGIKIATDRDEAEQYAEEILGMDL-------KGYTVDQILVEQGVDFVDELYVGVTMDRGEGQPVLMVSTEGGVNIEEVAEENPDAIAREHVDPAFGLHPYQARKVVYEAGVDADVALDVASILTTLYDLYEENDASEIEVNPVMITSDRDVI 202          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_ARTAT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter aurescens (strain TC1) GN=sucC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.549e-16
Identity = 61/219 (27.85%), Postives = 104/219 (47.49%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +++ EYQ  ++   +G+ V  G+   + +E K A +         VVK+Q+  GGRG         GGV + K  EE  + +  +LG  +       +G  V+KV + +   +  E YF+++LDR     + +   +GG  IE LA + P  + K+ ID   GI    A ++V         R    + + KL+ +F + D TL+E +PL  T   ++V
Sbjct:    1 MDLFEYQARDMFEAHGVPVLAGIVAHTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTAEEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEFYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPEALAKIAIDPAVGIDQAKADEIVAAAGFAEELRGKVADVILKLWDVFKKEDATLVEVNPLVRTGAGEIV 202          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_THETH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thermus thermophilus GN=sucC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.023e-16
Identity = 62/219 (28.31%), Postives = 108/219 (49.32%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +N+HEYQ  E++A+YG+ VP G    + +E K+  ++     K +V+K+Q+  GGRG         GGV +    +E  + A  +LG  +       +G  V KV + E + +  E Y  ++LDR     +++   +GG  IE++A + P  I K  ID   G    +A ++V   A    + N   + +  LY+ +   D ++ E +PL  T+   +V
Sbjct:    1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEF---GKRVVIKAQVHVGGRGKA-------GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVK-RAGLEGNLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIV 201          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BACFR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacteroides fragilis GN=sucC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.450e-16
Identity = 61/213 (28.64%), Postives = 98/213 (46.01%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903
            + +HEYQ  E+ + YGI V +     + D    A      +   + +K+Q+L GGRG         GGV +   + +V   A  +L   +       +G  V+K+ L E +++  E Y +  +DR T    +I  + GG  IE++A + P  I++  ID   G+ D  A K    L  +    N     ++ LYK F E D +L E +PL  T
Sbjct:    1 MKVHEYQAKEIFSTYGIPVERHALCHTADGAVAAYHRMGVNR--VAIKAQVLTGGRGKA-------GGVKLANNDRDVYQYAQTILEMTI-------KGYPVTKILLSEAVNIAAEYYISFTIDRNTRSVTLIMSAAGGMDIEEVARQSPEKIIRCSIDPLIGVPDYLAHKFAFSLFEQAEQANRMATIIQDLYKAFIEKDASLAEINPLVLT 197          
The following BLAST results are available for this feature:
BLAST of DY262816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_SALAI3.120e-1731.63Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLSY4.075e-1730.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLAA4.075e-1730.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ROSCS5.322e-1729.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CORGL9.079e-1727.60Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYCVP1.186e-1628.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALLT1.549e-1627.27Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ARTAT1.549e-1627.85Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_THETH2.023e-1628.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACFR3.450e-1628.64Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262816 ID=DY262816; Name=DY262816; organism=Citrus clementina; type=EST; length=1311bp
AACGAAATAAAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGGGT
CAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCAGT
AAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACG
TACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATT
GTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGC
AACAGCAGCTCCGCCGTCTCAACATCCACGAATATCAGGGGGCTGAGTTG
ATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGT
TGATGAAGTCAAAAAGGCTATTCAGGATGCTTTTCCCGATCATAAGGAGC
TGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTT
AAGTCTGGTCTTAAGGGTGGGGTTCACATCGTTAAGAAAGAAGAAGTTGA
AGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTG
GTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCA
CTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGG
CCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTG
CTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAAT
GGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCACCCAA
GGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAAC
TCTTTTGTGAGAGTGACTGCACATTATTGGAAAATCATCCTCTAGCAGAG
ACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCATAGTTGAATTTTGATGA
TAATGCTGCCTTCCGTCAGAAAGAAAATTGGCTCTGCGTGAACCAACGCA
AGAAGATCCTCGAGAGGTGGCTGCTGGNAAAGCTGATTTAAATACTTGGG
CTGGGAAGGGAAAATGGGTGGATGGTGAAGGGTGCAGGAATAATTAGGGC
AAAAATGGAATGTTGGGGGGAAAGGCTTCGGAAGGGCCAGGGGGTGGGGG
CAATTAAAATTTTGACATTTCGAATGAAAAAGCAAAAGAAACCTTTGGGG
AAAAAAATTTTGGAAGAGAAAAATAGGGAAAAGGGGGAGGAAAAAAACCC
CCGGGGGGAAATATTGTCTCGAGGGGCGGGGCTAAAAAAAAAGGAGGTTC
CCCCCCAACAA
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