DY262816
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_ACIAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=sucC PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.130e-33 Identity = 79/210 (37.62%), Postives = 121/210 (57.62%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPL 894 + IHEYQG E++ +G+ VP+G+ +V E +A Q VVK+QI AGGRG G GGV + K ++V+ LAG +LG L T QTGP+G+ V ++Y+ + + NE+Y +++ DR T +I S+GG IE++A P+ IV ID GIT E KV + + + A++ KLYK + ++D +L+E +PL Sbjct: 1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIDDVKKLAGDILGMQLKTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRATQKVALIASSEGGMDIEEVAHSTPDKIVTEMIDPLTGITPEQGRKVAEAIGLSGKSVDQALDIFAKLYKCYMDTDASLVEINPL 201 HSP 2 Score: 26.1794 bits (56), Expect = 7.130e-33 Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADL 1040 +ALR+ +EDP EV A K DL Sbjct: 230 VALRDLDEEDPAEVEASKFDL 250
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_RHORT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=sucC PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.209e-32 Identity = 86/223 (38.57%), Postives = 127/223 (56.95%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD-AFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921 +NIHEYQ +++AKYG+ V KG + +E +K D A P + VVKSQI AGGRG G FK +G KGGV +VK +EV A +MLG LVT Q+G +GK V +VY+ + + E+Y ++++DR T+ ++ ++GG IE++A P I ID GI+ V L + + + LYK F E+DC++LE +PL T Q++ Sbjct: 1 MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGPVY---VVKSQIHAGGRGKGHFKEPSAGDKGGVRVVKSTDEVFSNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYLSLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAIDQATGISGFHCRNVAFSLGLEGKQVGAFTKLLSALYKCFTETDCSMLEINPLVVTGDGQVI 220 HSP 2 Score: 24.6386 bits (52), Expect = 1.209e-32 Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3 Query: 987 REPTQEDPREVAAGKADLN 1043 R+ +EDP E+ A K DLN Sbjct: 243 RDEDEEDPMELEASKHDLN 261
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_NAUPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=sucC PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.541e-32 Identity = 80/213 (37.56%), Postives = 123/213 (57.75%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903 +NIHEYQ E+ KYG+ P+G + E ++ ++ VVK+QI AGGRG GGV + K +EVE +A +MLG LVT QTGP+GK+V KVY+ E + +E+Y ++LDR P+++ ++GG IE++AEK P I+KV ID G A K+ GL ++ + I+ LY ++ ++D ++E +PL +T Sbjct: 1 MNIHEYQAKEIFRKYGVPTPRGGVAFTGPEARRVAEEL--GGNLWVVKAQIHAGGRGKA-------GGVKLAKSLDEVEKIAEEMLGMTLVTHQTGPEGKVVKKVYIEEGADIKDELYLGMVLDRALEMPVMMASTEGGMEIEEVAEKTPEKIIKVAIDPAIGFQPFHARKLAFGLGLPKDEQREFIKFASALYNVYMDNDAEMIEINPLIKT 204
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_HERAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Herminiimonas arsenicoxydans GN=sucC PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.541e-32 Identity = 88/223 (39.46%), Postives = 125/223 (56.05%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLENHPLAETSGKQLV 921 +NIHEYQG E++ KYG+ PKG SVDE +A + K VVK+QI AGGRG G GGV + K +EV A +LG LVT QTGP+G++V ++ + E + E+Y +++DR + ++ S+GG IE +AE P I KV ID F G+ D +A D +A K+ +I Q + LYK F E+D +L E +PL T ++V Sbjct: 1 MNIHEYQGKEILRKYGVTTPKGFPCFSVDEAVQAAEKL--GGKVWVVKAQIHAGGRGKG-------GGVKVAKSLDEVRKYANDILGMTLVTHQTGPEGRLVKRLLIEEGADIKKELYVGMVVDRGSQRVALMASSEGGMDIEHVAEHTPEKIHKVFIDPFKGLLDSEA----DDIARKIGVPEGSIPQARAFMQGLYKAFDETDASLAEINPLIVTGDDRIV 210
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_PHEZH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Phenylobacterium zucineum (strain HLK1) GN=sucC PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.574e-32 Identity = 79/221 (35.75%), Postives = 121/221 (54.75%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQL 918 +NIHE+Q ++A++G+ VP+G SVDE +A + VVKSQI AGGRG G F+ KGGV +VK +EV+ A +MLG++LVT QTG GK V+++Y+ E + E Y ++++DR+T+ ++ ++GG IE++A P IV ID G+ + L +A + +LY F D ++LE +PL T L Sbjct: 1 MNIHEHQAKAVLAEFGVAVPRGYPAFSVDEAVQAAEKL--GGPVFVVKSQIHAGGRGKGRFEGLGPDAKGGVRVVKSVDEVKANAEEMLGRVLVTHQTGAAGKQVNRLYIEEGAQIAKEFYLSLLVDRETSWVSVVASTEGGMDIEEVAHATPEKIVTFSIDPATGVFPHHGRHLAKALGLTGGLAKEAATLLNQLYAAFLAKDMSMLEINPLIVTGDDHL 219 HSP 2 Score: 30.4166 bits (67), Expect = 1.574e-32 Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLNTWAGKGKWVDGE-GC 1085 +ALR+ ++EDP+E+ A K DL+ A +DGE GC Sbjct: 240 VALRDESEEDPKEIEASKYDLSYIA-----LDGEIGC 271
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_LEPBA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=sucC PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.051e-32 Identity = 77/219 (35.16%), Postives = 119/219 (54.34%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921 + +HEYQ E++ ++ NVP G + +V + +KA + +VVK+QI AGGRG G GGV + K K++ + A K+LG L+T QTGP+GK V KVYL + L + E Y +I+LDR II+ ++GG IE++AE +P I+K+ ID GI ++ L + V +Y + + D LLE +PL T +++ Sbjct: 1 MKVHEYQAKEILRRHNANVPFGKVIDAVGDFEKAYNEVVQKSPVVVVKAQIHAGGRGKG-------GGVKVAKTKDDAKAAAEKILGMQLITPQTGPEGKKVLKVYLEQGLEIAKEYYLSILLDRAIRKTIIMASTEGGMEIEEVAETHPEKIIKIQIDPGIGIQGSQVRELAFALGIPTEAQKSFTALVNSVYNAYIKEDAALLEINPLILTKQNEII 212 HSP 2 Score: 25.7942 bits (55), Expect = 2.051e-32 Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 981 ALREPTQEDPREVAAGKADLN 1043 ALR+ T+EDP EV A + +LN Sbjct: 233 ALRDITEEDPYEVKAKEYNLN 253
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BACHD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans GN=sucC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.051e-32 Identity = 85/236 (36.02%), Postives = 126/236 (53.39%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLVXXXXXXXXXXXXXXRQK 972 +NIHEYQG EL+ +YG+ VP G SVDE +A ++ VVK+QI AGGRG GGV + K +EV A ++LG+ LVT QTGP+GK V ++ + E + E Y ++LDR T+ +++ +GGT IE++AEK P I K ID G+ A ++ + A++ + LYK+F E DC++ E +PL T +++ RQK Sbjct: 1 MNIHEYQGKELLRQYGVAVPNGKVAFSVDEAVEAAKEL--GSNVCVVKAQIHAGGRGKA-------GGVKVAKNLDEVRTYADEILGKTLVTHQTGPEGKEVKRLLIEEGCDIQKEYYVGLVLDRATSRVVMMASEEGGTEIEEVAEKTPEKIFKEIIDPVVGLQGFQARRLAFNINIPKELVGQAVKFMLGLYKVFVEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRQK 227 HSP 2 Score: 25.0238 bits (53), Expect = 2.051e-32 Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLN 1043 L R+ +EDP+E+ A K DL+ Sbjct: 230 LEFRDLDEEDPKEIEASKYDLS 251
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_RICTY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia typhi GN=sucC PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 3.434e-32 Identity = 85/219 (38.81%), Postives = 120/219 (54.79%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921 +NIHEYQ E++ KYG+ GL V +++ +AI + K VVK+QI AGGRG GGV +VK KEE + +A M G LVT QTGPQG+ V+ +Y+ ++ E YF+I+ DR + I ++GG IE +AEK P I+K +D G+ D + GL K + E VK +Y F E+D T +E +PL S K L+ Sbjct: 1 MNIHEYQAKEILRKYGVPTSTGLVVTKTEKINEAIDKL--NTKVYVVKAQIHAGGRGKA-------GGVKVVKSKEEAKKVAHDMFGINLVTHQTGPQGQKVNHLYIESGCDILKEYYFSIVFDRSASCITFIASTEGGVDIEAVAEKMPEKIIKFAVDPATGLQDFHMRGIAYGLGFKDSQAKQMKEIVKSVYNAFIETDATQIEINPLIINSYKNLL 210
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_CAUSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Caulobacter sp. (strain K31) GN=sucC PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.477e-32 Identity = 80/221 (36.20%), Postives = 121/221 (54.75%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQL 918 +NIHE+Q ++A++G VP+G +V+E A + VVKSQI AGGRG G FK KGGV +VK E+V+ A +MLG++LVT QTGP+GK V+++Y+ E ++ E Y ++++DR+T+ ++ ++GG IED+A P I ID G+ A + L +A + +LY F D +LE +PL T L Sbjct: 1 MNIHEHQAKAVLAEFGAPVPRGYPAFTVEEAVAAAEKL--GGPVFVVKSQIHAGGRGKGKFKGLGPDAKGGVRVVKSVEDVKTNAAEMLGRVLVTHQTGPKGKQVNRLYVEEGAAIAKEFYLSLLVDRETSMVSVVASTEGGMDIEDVAHATPEKIHSFSIDPATGVWPTHARALAKALGLTGGLAKEAATLLGQLYTAFLAKDMAMLEINPLIVTEDDHL 219 HSP 2 Score: 28.8758 bits (63), Expect = 3.477e-32 Identity = 17/36 (47.22%), Postives = 23/36 (63.89%), Query Frame = 3 Query: 981 ALREPTQEDPREVAAGKADLNTWAGKGKWVDGE-GC 1085 ALR+ ++EDP+E+ A K DL A +DGE GC Sbjct: 241 ALRDESEEDPKEIEASKYDLAYIA-----LDGEIGC 271
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_DIAST (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Diaphorobacter sp. (strain TPSY) GN=sucC PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.479e-32 Identity = 78/210 (37.14%), Postives = 121/210 (57.62%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPL 894 + IHEYQG E++ +G+ VP+G+ +V E +A Q VVK+QI AGGRG G GGV + K ++V+ A ++LG LVT QTGP+G+ V ++Y+ + + NE+Y +++ DR T +I S+GG IE++A P I+ ID GIT E + KV + A + A++ KLYK + ++D +L+E +PL Sbjct: 1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIDDVKARASEILGMQLVTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEMIDPLTGITPEQSKKVAAAIGLTGASVDQAVDLFAKLYKCYMDTDASLVEINPL 201 HSP 2 Score: 26.1794 bits (56), Expect = 3.479e-32 Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADL 1040 +ALR+ +EDP EV A K DL Sbjct: 230 VALRDLDEEDPAEVEASKFDL 250 The following BLAST results are available for this feature:
BLAST of DY262816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262816 ID=DY262816; Name=DY262816; organism=Citrus clementina; type=EST; length=1311bpback to top |