DY262816
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_ACISJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidovorax sp. (strain JS42) GN=sucC PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.479e-32 Identity = 78/210 (37.14%), Postives = 121/210 (57.62%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPL 894 + IHEYQG E++ +G+ VP+G+ +V E +A Q VVK+QI AGGRG G GGV + K ++V+ A ++LG LVT QTGP+G+ V ++Y+ + + NE+Y +++ DR T +I S+GG IE++A P I+ ID GIT E + KV + A + A++ KLYK + ++D +L+E +PL Sbjct: 1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIDDVKARASEILGMQLVTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEMIDPLTGITPEQSKKVAAAIGLTGASVDQAVDLFAKLYKCYMDTDASLVEINPL 201 HSP 2 Score: 26.1794 bits (56), Expect = 3.479e-32 Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADL 1040 +ALR+ +EDP EV A K DL Sbjct: 230 VALRDLDEEDPAEVEASKFDL 250
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_GEOKA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 3.479e-32 Identity = 78/213 (36.62%), Postives = 121/213 (56.81%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903 +NIHEYQ E++ YG++VP G +VDE +A ++ VVK+QI AGGRG GGV + K EEV A ++LG++LVT QTGP+GK V ++ + E + E Y +++DR T+ +++G +GGT IE++A K P I K ID G+ A ++ + N A++ + LY++F + DC++ E +PL T Sbjct: 1 MNIHEYQAKEILRSYGVSVPNGRVAFTVDEAVEAAKEL--GAPVCVVKAQIHAGGRGKA-------GGVKVAKSLEEVRTYASELLGKVLVTHQTGPEGKEVKRLLIEEGCDIQKEYYIGLVVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGLQAFQARRLAFNINIPKHLVNQAVKFMMGLYQVFVDKDCSIAEINPLVVT 204 HSP 2 Score: 27.335 bits (59), Expect = 3.479e-32 Identity = 17/38 (44.74%), Postives = 21/38 (55.26%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLNTWAGKGK---WVDGEG 1082 L R+ +EDP+EV A K DLN A G V+G G Sbjct: 230 LEYRDLDEEDPKEVEASKYDLNYIALDGNIGCMVNGAG 267
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURXL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia xenovorans (strain LB400) GN=sucC PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 4.485e-32 Identity = 79/219 (36.07%), Postives = 129/219 (58.90%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921 + IHEYQG E++ K+G+ VP+G V SVD+ KA ++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y +++DR + +++ S+GG +E++AEK P +I K+ +D G+ D +A ++ + A A ++ LYK F E+D +L E +PL T +++ Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYANQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQKIVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEADELATKIGVPAASLPQARAILQGLYKAFWETDASLAEINPLILTGDGKVI 210
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BRAJA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium japonicum GN=sucC PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.528e-32 Identity = 83/221 (37.56%), Postives = 120/221 (54.30%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQL 918 +NIHEYQ L+ ++G+ + KG+ V + + A + A P VVKSQI AGGRG G FK +G KGGV I K EV + A +MLG LVT QTGP GK V+++Y+ + + E Y ++++DR+T+ + ++GG +IED+A P IV +D GI V + L A + +LY F D ++LE +PL T QL Sbjct: 1 MNIHEYQAKALLGEFGVPISKGVPVLKAADAEAAAK-ALPG-PVYVVKSQIHAGGRGKGKFKEASAGDKGGVRIAKSAAEVSEFAKQMLGATLVTIQTGPAGKQVNRLYIEDGSDIDKEFYLSLLVDRETSRVSFVVSTEGGVNIEDVAHNTPEKIVTFSVDPATGIMGHHGRTVANALKLSGDLAKQAEKLTAQLYAAFVAKDMSMLEINPLVVTKQGQL 219 HSP 2 Score: 30.4166 bits (67), Expect = 4.528e-32 Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLN 1043 LALR+ T+ED +E+ A K DLN Sbjct: 240 LALRDETEEDAKEIEASKYDLN 261
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BACCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=sucC PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.530e-32 Identity = 79/213 (37.09%), Postives = 118/213 (55.40%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903 +NIHEYQG ++ YG++VP G +V+E +A ++ D VVK+QI AGGRG GGV + K EEV A +LG LVT QTGP+GK V ++ + E + E Y ++LDR T+ +++ +GGT IE++AEK P I K ID G+ A ++ + A++ + LY++F E DC++ E +PL T Sbjct: 1 MNIHEYQGKAILRSYGVSVPNGKVAFTVEEAVEAAKELGTD--VCVVKAQIHAGGRGKA-------GGVKVAKNLEEVRTYAENILGSTLVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFHINIPKELVGQAVKFMMGLYRVFIEKDCSIAEINPLVTT 204 HSP 2 Score: 28.4906 bits (62), Expect = 4.530e-32 Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLN 1043 L LR+ +EDP+E+ A K DLN Sbjct: 230 LELRDLDEEDPKEIEASKYDLN 251
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURS3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia sp. (strain 383) GN=sucC PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 5.857e-32 Identity = 85/223 (38.12%), Postives = 132/223 (59.19%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLENHPLAETSGKQLV 921 + IHEYQG E++ K+G+ VP+G SVDE K ++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y ++++DR T +++G S+GG IE++AEK+P +I KV ++ G+ D A D LA K+ +I Q + LYK F E+D +L E +PL +S +++ Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMVEEGADIKQELYVSLVVDRVTQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSSDGKVI 210
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_AGRRK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=sucC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.897e-32 Identity = 85/213 (39.91%), Postives = 116/213 (54.46%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPL 894 +NIHEYQ L+ +G V G+A+ S DE + A + VVKSQI AGGRG G FK KGGV + K E+V + MLG LVTKQTGP GK V+++Y+ + + E+Y +I++DR + ++GG IE +A P I+ V ID G+T D+ + D L + A R D + LYK F E D LLE +PL Sbjct: 1 MNIHEYQAKALLKSFGAPVADGVAIFSADEAEAAAKQL--PGPLYVVKSQIHAGGRGKGKFKELSPDAKGGVRLAKSIEDVVANSKDMLGNTLVTKQTGPAGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIETVAHDTPEKIITVAIDPAAGVTAADSTAISDALKLEGAAREDGAKLFPILYKAFVEKDMALLEVNPL 211 HSP 2 Score: 22.7126 bits (47), Expect = 5.897e-32 Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 3 Query: 981 ALREPTQEDPREVAAGKADL 1040 ALR+ ++ED +E+ A + DL Sbjct: 241 ALRDKSEEDEKEIQAHEYDL 260
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_JANSC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Jannaschia sp. (strain CCS1) GN=sucC PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 5.897e-32 Identity = 78/216 (36.11%), Postives = 117/216 (54.17%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903 +NIHEYQ L+A+YG V G V ++ K A + D VVK+QI AGGRG G FK +G GGV + K +E D A KMLG+ LVT QTGP GK V+++Y+ + + EMY A+++DR+++ + ++GG IE++A P I+ +D G +V L + ++ + +L+ F E D +LE +PL T Sbjct: 1 MNIHEYQAKALLAQYGAPVSDGRVVTKAEDAKTAAGEM--DGPLWVVKAQIHAGGRGKGKFKEADAGEAGGVRLAKSAQEAADEAKKMLGRTLVTHQTGPVGKQVNRIYIEDGSGIETEMYLALLVDRQSSRISFVCSTEGGMDIEEVAASTPEKILSFSVDPATGYQPYHGRRVAFSLGLEGQQVKQCVKLMGQLFTAFQEKDMEMLEINPLIVT 214 HSP 2 Score: 33.4982 bits (75), Expect = 5.897e-32 Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 3 Query: 981 ALREPTQEDPREVAAGKADLNTWAGKGKWVDGE-GC 1085 +LR+ T+EDP+E+AA K DLN A +DGE GC Sbjct: 241 SLRDETEEDPKELAASKFDLNYIA-----LDGEIGC 271
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_MESSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=sucC PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 7.650e-32 Identity = 86/213 (40.38%), Postives = 120/213 (56.34%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPL 894 +NIHEYQ EL+ YG V +G+A+ + E + A + VVKSQI AGGRG G FK KGGV + K EEV A +MLG LVTKQTGP+GK V+++Y+ + + E+Y +I++DR P + ++GG IE +AE+ P I+ + I G+T++D K+ L A D LYK F E D +LLE +PL Sbjct: 1 MNIHEYQAKELLRGYGAPVAQGVAIFTSGEAEAAAKKL--PGPLYVVKSQIHAGGRGKGKFKELSPDAKGGVRLAKSIEEVVANAKEMLGNTLVTKQTGPEGKQVNRLYIEDGADIARELYLSILIDRTVGRPAFVVSTEGGMDIEAVAEETPEKILTLAIAPERGVTNDDVTKLNAALKLDGAAAKDGETLFPILYKAFTEKDMSLLEVNPL 211
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_DECAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Dechloromonas aromatica (strain RCB) GN=sucC PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 7.650e-32 Identity = 81/210 (38.57%), Postives = 120/210 (57.14%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPL 894 + IHEYQG +++ K+G+ VP+G+ +V++ KA + K VVK+QI AGGRG G GGV + E+V + AG++LG LVT QTGP+G+ V + + E + +E Y A + DR T I+ +GG IE++A K P IVKV ++ G+TDE A + G+ A IE +K LY + E+D +L E +PL Sbjct: 1 MKIHEYQGKQILKKFGVTVPRGIHCTTVEDAVKAAETL--GGKVWVVKAQIHAGGRGKG-------GGVKVATSLEKVREYAGQILGMQLVTHQTGPEGQKVRHLLIEEGADIKHEYYVAALTDRATQSVAIMASYEGGMDIEEVAHKTPEKIVKVFVNPLVGLTDEQALTLAKGMGMNEASIPQCIETLKSLYTCYMETDASLAEINPL 201 The following BLAST results are available for this feature:
BLAST of DY262816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262816 ID=DY262816; Name=DY262816; organism=Citrus clementina; type=EST; length=1311bpback to top |