DY262816
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BORBR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella bronchiseptica GN=sucC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.704e-31 Identity = 82/219 (37.44%), Postives = 124/219 (56.62%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921 + IHEYQG EL+ ++G+ VP+G+ SVDE A + VVK+QI AGGRG G GGV + + +EV L+ ++LG LVT QTGPQG+ V ++ + E + E Y I+ DR T ++ S+GG IE++A P I+KV +D G+TD +AA++ G+ A A + +KLYK + ++D +L E +PL T ++ Sbjct: 1 MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDII 210
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_ALKOO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=sucC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.704e-31 Identity = 83/219 (37.90%), Postives = 121/219 (55.25%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921 +NIHEYQ EL+ YG+ VP+G + V + ++A D VVK+QI AGGRG GGV I K EVE + ++LG+ LVT QTG +G++V + + E + E Y A LDR+ + +I +GG IE++A P+ I+K ID G+TD +V L + ND +E +K LY+ F E DC+LLE +PL T +++ Sbjct: 1 MNIHEYQAKELLRDYGVPVPRGQVIYDVRDAQRAAWHIESDIA--VVKAQIHAGGRGKA-------GGVKIAKSITEVEQFSRELLGKTLVTHQTGQEGRVVKAILIEEGCEIYKEYYIAFTLDRENSKIALIASEEGGMDIEEVAANRPDKILKEIIDPLIGLTDFQGRRVCFNLNIDGSLINDTVELMKNLYRCFIEKDCSLLEINPLVITKNNRVM 210
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_NITWN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=sucC PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.208e-31 Identity = 82/221 (37.10%), Postives = 121/221 (54.75%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQL 918 +NIHEYQ L+ ++G+ V +G+ V E + A + VVKSQI AGGRG G FK +G KGGV + + +EV+ AG+MLG LVT QTGP GK V+++Y+ E + E YF+ ++DR+T+ + ++GG +IE++A K P IV +D G+ V L + A + V +LY F D +LE +PL T +L Sbjct: 1 MNIHEYQAKALLREFGVPVSRGVPVLQASEAEAAAETL--GGPVWVVKSQIHAGGRGKGKFKEASAGEKGGVRLARSIDEVKTFAGQMLGATLVTAQTGPAGKQVNRLYIEEGSDIDKEFYFSALVDRETSRISFVVSTEGGMNIEEVAHKTPEKIVTFSVDPATGVMSHHGRTVARALRLRGDLGKQAEKLVTQLYDAFIARDMAMLEINPLVVTKQGEL 219 HSP 2 Score: 25.409 bits (54), Expect = 2.208e-31 Identity = 14/38 (36.84%), Postives = 24/38 (63.16%), Query Frame = 3 Query: 978 LALREPTQEDPREVAAGKADLNTWAGKGK---WVDGEG 1082 +ALR+ ++ED +E+ A + DL+ A G+ V+G G Sbjct: 240 VALRDESEEDAKEIEASRFDLSYVALDGQIGCMVNGAG 277
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BACA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus amyloliquefaciens (strain FZB42) GN=sucC PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 2.209e-31 Identity = 81/237 (34.18%), Postives = 126/237 (53.16%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLVXXXXXXXXXXXXXXRQKE 975 +NIHEYQG E++ KYG++VP+G + +E + + VVK+QI AGGRG GGV I K K+EV++ A ++LG+ LVT QTGP G+++ ++ + E + E Y ++LDR T+ +++ +GGT IE++AEK P I K ID G+ A ++ + A + + LYK F E DC++ E +PL T ++ RQK+ Sbjct: 1 MNIHEYQGKEVLRKYGVSVPEGKVAFTAEEAVEKAESL--SSSVYVVKAQIHAGGRGKA-------GGVKIAKTKDEVKEYAEELLGKTLVTHQTGPDGQVIKRLLIEEGCDIKKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREIAFAINIPKELVGKAAKFMLGLYKAFVEKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALYRQKD 228 HSP 2 Score: 23.8682 bits (50), Expect = 2.209e-31 Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 3 Query: 987 REPTQEDPREVAAGKADLN 1043 R+ +EDP+E+ A K DL+ Sbjct: 233 RDLDEEDPKEIEASKYDLS 251
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_GEOLS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=sucC PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 2.226e-31 Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903 +NIHEYQ E+++ YGI VP+ + D+V++A + H VVK+QI AGGRG GGV +V E+ D+A ++ G+ LVTKQTGP+G V ++ + E + + E Y +I LDR+T+ +I ++GG IE++A+K P+ I + ID F G+ A K+ L A D +E + YK E DC+L+E +PL T Sbjct: 1 MNIHEYQAKEILSTYGIPVPRNRVALTADQVERAAK-MMGGH--CVVKAQIYAGGRGKA-------GGVKLVHHPEQASDVAKELFGKRLVTKQTGPEGLKVRRILVEETVEIAREFYLSITLDRETSRYCLIASAEGGMDIEEVAQKSPDKIHVLTIDPFTGLRTYQARKIALALGLSGAVCEDCVELILNTYKCCLEKDCSLIEINPLVVT 203
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_PELLD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelodictyon luteolum (strain DSM 273) GN=sucC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31 Identity = 77/215 (35.81%), Postives = 122/215 (56.74%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFP--DHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903 +NIHEYQG +++ K+G+ VPKG+ S +E K+A + F D +V+K+QI AGGRG GGV + K EE ++A +MLG LVT QTGP+GK V ++ + E +++ E Y I LDR T+ +++ ++GG IE +AE+ P +++K+ +D G+ A + L + +A+ + LY + D L E +PL T Sbjct: 1 MNIHEYQGKDILRKFGVAVPKGIVAYSAEEAKQAAEQLFAEQDSPVVVIKAQIHAGGRGKA-------GGVKLAKSPEEAHEIASQMLGTTLVTHQTGPEGKEVRRLLVEEGMNIDREFYVGITLDRATSNNVLMISTEGGMEIEKVAEETPELLLKIQVDARFGLQGFQAREAAFFLGLEGEQFRNAVSFITALYNAYTSIDAALAEINPLVVT 208
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_HYPNA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=sucC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31 Identity = 86/213 (40.38%), Postives = 122/213 (57.28%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTF---KSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPL 894 +NIHEYQ L+ +G V +G+ V S+ +V+KAI D P VVKSQI AGGRG G F ++G KGGV + KE+V+ A MLG LVT QT GK V+++Y+ + + E+Y +I++DR T+ + ++GG IE +A P I+ V ID G+T DAAK+ L + D ++ LYK F E D +LE +PL Sbjct: 1 MNIHEYQAKALLKSFGAPVAEGVPVLSLADVQKAI-DTLPGPL-WVVKSQIHAGGRGKGKFIEKEAGEKGGVRLAFNKEDVKKHAEAMLGNHLVTAQTSAAGKQVNRLYIEDGADIEKELYLSILVDRATSNVAFVVSTEGGMDIEAVAHDTPEKILTVQIDPMAGVTPADAAKINSALNLSGSAAEDGLKLYPILYKAFVEKDMAMLEVNPL 211
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURM1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=sucC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31 Identity = 83/214 (38.79%), Postives = 127/214 (59.35%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLENHPL 894 + IHEYQG E++ K+G+ VP+G SVDE K ++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y ++++DR + +++G S+GG IE++AEK+P +I KV ++ G+ D A D LA K+ +I Q + LYK F E+D +L E +PL Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYANQILGMQLVTHQTGPEGQKVNRLLIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDSQA----DDLATKIGVPAASIPQARAILQGLYKAFWETDASLAEINPL 201
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURCJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=sucC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31 Identity = 83/214 (38.79%), Postives = 127/214 (59.35%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLENHPL 894 + IHEYQG E++ K+G+ VP+G SVDE K ++ VVK+QI AGGRG G GGV + K E+V + A ++LG LVT QTGP+G+ V+++ + E + E+Y ++++DR + +++G S+GG IE++AEK+P +I KV ++ G+ D A D LA K+ +I Q + LYK F E+D +L E +PL Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRVSQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPL 201
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BORA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella avium (strain 197N) GN=sucC PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31 Identity = 80/219 (36.53%), Postives = 123/219 (56.16%), Query Frame = 1 Query: 268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921 + IHEYQG EL+ ++G+ VP+G+ SV+E A + VVK+QI AGGRG G GGV + + +EV LA ++LG LVT QTG QG+ V+++Y+ + + E Y +++ DR T +I S+GG IE++A P I+ ID G+TD A KV D + A++ KKLY+ + ++D +L+E +PL S ++ Sbjct: 1 MKIHEYQGKELLKQFGVPVPRGIPAFSVEEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSLDEVRQLASQILGMQLVTHQTGAQGQKVNRLYIEDGADIQKEYYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEYIDPIVGLTDAQAKKVADAIGMPADSTAQAVDVFKKLYQCYMDTDASLVEINPLNRDSKGNII 210 The following BLAST results are available for this feature:
BLAST of DY262816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262816 ID=DY262816; Name=DY262816; organism=Citrus clementina; type=EST; length=1311bpback to top |