DY262816

Overview
NameDY262816
Unique NameDY262816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BORBR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella bronchiseptica GN=sucC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.704e-31
Identity = 82/219 (37.44%), Postives = 124/219 (56.62%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG EL+ ++G+ VP+G+   SVDE   A +         VVK+QI AGGRG G       GGV + +  +EV  L+ ++LG  LVT QTGPQG+ V ++ + E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+    A    A  + +KLYK + ++D +L E +PL  T    ++
Sbjct:    1 MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDII 210          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_ALKOO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.704e-31
Identity = 83/219 (37.90%), Postives = 121/219 (55.25%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            +NIHEYQ  EL+  YG+ VP+G  +  V + ++A      D    VVK+QI AGGRG         GGV I K   EVE  + ++LG+ LVT QTG +G++V  + + E   +  E Y A  LDR+ +   +I   +GG  IE++A   P+ I+K  ID   G+TD    +V   L    +  ND +E +K LY+ F E DC+LLE +PL  T   +++
Sbjct:    1 MNIHEYQAKELLRDYGVPVPRGQVIYDVRDAQRAAWHIESDIA--VVKAQIHAGGRGKA-------GGVKIAKSITEVEQFSRELLGKTLVTHQTGQEGRVVKAILIEEGCEIYKEYYIAFTLDRENSKIALIASEEGGMDIEEVAANRPDKILKEIIDPLIGLTDFQGRRVCFNLNIDGSLINDTVELMKNLYRCFIEKDCSLLEINPLVITKNNRVM 210          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_NITWN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.208e-31
Identity = 82/221 (37.10%), Postives = 121/221 (54.75%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQL 918
            +NIHEYQ   L+ ++G+ V +G+ V    E + A +         VVKSQI AGGRG G FK   +G KGGV + +  +EV+  AG+MLG  LVT QTGP GK V+++Y+ E   +  E YF+ ++DR+T+    +  ++GG +IE++A K P  IV   +D   G+       V   L  +      A + V +LY  F   D  +LE +PL  T   +L
Sbjct:    1 MNIHEYQAKALLREFGVPVSRGVPVLQASEAEAAAETL--GGPVWVVKSQIHAGGRGKGKFKEASAGEKGGVRLARSIDEVKTFAGQMLGATLVTAQTGPAGKQVNRLYIEEGSDIDKEFYFSALVDRETSRISFVVSTEGGMNIEEVAHKTPEKIVTFSVDPATGVMSHHGRTVARALRLRGDLGKQAEKLVTQLYDAFIARDMAMLEINPLVVTKQGEL 219          

HSP 2 Score: 25.409 bits (54), Expect = 2.208e-31
Identity = 14/38 (36.84%), Postives = 24/38 (63.16%), Query Frame = 3
Query:  978 LALREPTQEDPREVAAGKADLNTWAGKGK---WVDGEG 1082
            +ALR+ ++ED +E+ A + DL+  A  G+    V+G G
Sbjct:  240 VALRDESEEDAKEIEASRFDLSYVALDGQIGCMVNGAG 277          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BACA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus amyloliquefaciens (strain FZB42) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.209e-31
Identity = 81/237 (34.18%), Postives = 126/237 (53.16%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLVXXXXXXXXXXXXXXRQKE 975
            +NIHEYQG E++ KYG++VP+G    + +E  +  +         VVK+QI AGGRG         GGV I K K+EV++ A ++LG+ LVT QTGP G+++ ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A + +  LYK F E DC++ E +PL  T    ++              RQK+
Sbjct:    1 MNIHEYQGKEVLRKYGVSVPEGKVAFTAEEAVEKAESL--SSSVYVVKAQIHAGGRGKA-------GGVKIAKTKDEVKEYAEELLGKTLVTHQTGPDGQVIKRLLIEEGCDIKKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREIAFAINIPKELVGKAAKFMLGLYKAFVEKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALYRQKD 228          

HSP 2 Score: 23.8682 bits (50), Expect = 2.209e-31
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  987 REPTQEDPREVAAGKADLN 1043
            R+  +EDP+E+ A K DL+
Sbjct:  233 RDLDEEDPKEIEASKYDLS 251          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_GEOLS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.226e-31
Identity = 81/213 (38.03%), Postives = 122/213 (57.28%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903
            +NIHEYQ  E+++ YGI VP+     + D+V++A +     H   VVK+QI AGGRG         GGV +V   E+  D+A ++ G+ LVTKQTGP+G  V ++ + E + +  E Y +I LDR+T+   +I  ++GG  IE++A+K P+ I  + ID F G+    A K+   L    A   D +E +   YK   E DC+L+E +PL  T
Sbjct:    1 MNIHEYQAKEILSTYGIPVPRNRVALTADQVERAAK-MMGGH--CVVKAQIYAGGRGKA-------GGVKLVHHPEQASDVAKELFGKRLVTKQTGPEGLKVRRILVEETVEIAREFYLSITLDRETSRYCLIASAEGGMDIEEVAQKSPDKIHVLTIDPFTGLRTYQARKIALALGLSGAVCEDCVELILNTYKCCLEKDCSLIEINPLVVT 203          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_PELLD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelodictyon luteolum (strain DSM 273) GN=sucC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31
Identity = 77/215 (35.81%), Postives = 122/215 (56.74%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFP--DHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAET 903
            +NIHEYQG +++ K+G+ VPKG+   S +E K+A +  F   D   +V+K+QI AGGRG         GGV + K  EE  ++A +MLG  LVT QTGP+GK V ++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P +++K+ +D   G+    A +    L  +     +A+  +  LY  +   D  L E +PL  T
Sbjct:    1 MNIHEYQGKDILRKFGVAVPKGIVAYSAEEAKQAAEQLFAEQDSPVVVIKAQIHAGGRGKA-------GGVKLAKSPEEAHEIASQMLGTTLVTHQTGPEGKEVRRLLVEEGMNIDREFYVGITLDRATSNNVLMISTEGGMEIEKVAEETPELLLKIQVDARFGLQGFQAREAAFFLGLEGEQFRNAVSFITALYNAYTSIDAALAEINPLVVT 208          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_HYPNA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=sucC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31
Identity = 86/213 (40.38%), Postives = 122/213 (57.28%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTF---KSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPL 894
            +NIHEYQ   L+  +G  V +G+ V S+ +V+KAI D  P     VVKSQI AGGRG G F   ++G KGGV +   KE+V+  A  MLG  LVT QT   GK V+++Y+ +   +  E+Y +I++DR T+    +  ++GG  IE +A   P  I+ V ID   G+T  DAAK+   L    +   D ++    LYK F E D  +LE +PL
Sbjct:    1 MNIHEYQAKALLKSFGAPVAEGVPVLSLADVQKAI-DTLPGPL-WVVKSQIHAGGRGKGKFIEKEAGEKGGVRLAFNKEDVKKHAEAMLGNHLVTAQTSAAGKQVNRLYIEDGADIEKELYLSILVDRATSNVAFVVSTEGGMDIEAVAHDTPEKILTVQIDPMAGVTPADAAKINSALNLSGSAAEDGLKLYPILYKAFVEKDMAMLEVNPL 211          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURM1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=sucC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31
Identity = 83/214 (38.79%), Postives = 127/214 (59.35%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLENHPL 894
            + IHEYQG E++ K+G+ VP+G    SVDE  K  ++        VVK+QI AGGRG G       GGV + K  E+V + A ++LG  LVT QTGP+G+ V+++ + E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L E +PL
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYANQILGMQLVTHQTGPEGQKVNRLLIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDSQA----DDLATKIGVPAASIPQARAILQGLYKAFWETDASLAEINPL 201          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BURCJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=sucC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31
Identity = 83/214 (38.79%), Postives = 127/214 (59.35%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLENHPL 894
            + IHEYQG E++ K+G+ VP+G    SVDE  K  ++        VVK+QI AGGRG G       GGV + K  E+V + A ++LG  LVT QTGP+G+ V+++ + E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L E +PL
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRVSQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPL 201          
BLAST of DY262816 vs. ExPASy Swiss-Prot
Match: SUCC_BORA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella avium (strain 197N) GN=sucC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.907e-31
Identity = 80/219 (36.53%), Postives = 123/219 (56.16%), Query Frame = 1
Query:  268 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLENHPLAETSGKQLV 921
            + IHEYQG EL+ ++G+ VP+G+   SV+E   A +         VVK+QI AGGRG G       GGV + +  +EV  LA ++LG  LVT QTG QG+ V+++Y+ +   +  E Y +++ DR T    +I  S+GG  IE++A   P  I+   ID   G+TD  A KV D +         A++  KKLY+ + ++D +L+E +PL   S   ++
Sbjct:    1 MKIHEYQGKELLKQFGVPVPRGIPAFSVEEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSLDEVRQLASQILGMQLVTHQTGAQGQKVNRLYIEDGADIQKEYYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEYIDPIVGLTDAQAKKVADAIGMPADSTAQAVDVFKKLYQCYMDTDASLVEINPLNRDSKGNII 210          
The following BLAST results are available for this feature:
BLAST of DY262816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_BORBR1.704e-3137.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALKOO1.704e-3137.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NITWN2.208e-3137.10Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACA22.209e-3134.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOLS2.226e-3138.03Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PELLD2.907e-3135.81Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HYPNA2.907e-3140.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM12.907e-3138.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURCJ2.907e-3138.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORA12.907e-3136.53Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262816 ID=DY262816; Name=DY262816; organism=Citrus clementina; type=EST; length=1311bp
AACGAAATAAAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGGGT
CAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCAGT
AAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACG
TACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATT
GTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGC
AACAGCAGCTCCGCCGTCTCAACATCCACGAATATCAGGGGGCTGAGTTG
ATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGT
TGATGAAGTCAAAAAGGCTATTCAGGATGCTTTTCCCGATCATAAGGAGC
TGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTT
AAGTCTGGTCTTAAGGGTGGGGTTCACATCGTTAAGAAAGAAGAAGTTGA
AGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTG
GTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCA
CTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGG
CCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTG
CTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAAT
GGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCACCCAA
GGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAAC
TCTTTTGTGAGAGTGACTGCACATTATTGGAAAATCATCCTCTAGCAGAG
ACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCATAGTTGAATTTTGATGA
TAATGCTGCCTTCCGTCAGAAAGAAAATTGGCTCTGCGTGAACCAACGCA
AGAAGATCCTCGAGAGGTGGCTGCTGGNAAAGCTGATTTAAATACTTGGG
CTGGGAAGGGAAAATGGGTGGATGGTGAAGGGTGCAGGAATAATTAGGGC
AAAAATGGAATGTTGGGGGGAAAGGCTTCGGAAGGGCCAGGGGGTGGGGG
CAATTAAAATTTTGACATTTCGAATGAAAAAGCAAAAGAAACCTTTGGGG
AAAAAAATTTTGGAAGAGAAAAATAGGGAAAAGGGGGAGGAAAAAAACCC
CCGGGGGGAAATATTGTCTCGAGGGGCGGGGCTAAAAAAAAAGGAGGTTC
CCCCCCAACAA
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