DY262819

Overview
NameDY262819
Unique NameDY262819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.366e-33
Identity = 64/113 (56.64%), Postives = 74/113 (65.49%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            TY+ KKL GVTTLDV RA TF                   HAG+TILPL SQ  P ++   ++I+ LT R Q+GGTEVVEAKAG GSATLSMAYA A FADACL+GL G  +V
Sbjct:  178 TYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANV 290          

HSP 2 Score: 43.5134 bits (101), Expect = 5.366e-33
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGK 482
            VE SFV S VTEL FFA+KVRLG+ G  + + + GPL E    G+ K
Sbjct:  291 VECSFVASQVTELAFFATKVRLGRTGAEEVYQL-GPLNEYERIGLEK 336          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.366e-33
Identity = 62/109 (56.88%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            TY+ K+L GVT LDVVRA TF                   HAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+GL G
Sbjct:  180 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 288          

HSP 2 Score: 46.595 bits (109), Expect = 5.366e-33
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGKK*NPKLKAFHLKRGVS 530
            +E +FV S VTELPFFASKVRLG+  G ++ +  GPL E    G+ K    K  A  +++GVS
Sbjct:  293 IECAFVSSQVTELPFFASKVRLGR-NGIEEVYSLGPLNEYERIGLEKA--KKELAGSIEKGVS 352          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.544e-32
Identity = 62/109 (56.88%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            TY+ K+L GVT LDVVRA TF                   HAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+GL G
Sbjct:  180 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 288          

HSP 2 Score: 45.0542 bits (105), Expect = 1.544e-32
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGKK*NPKLKAFHLKRGVS 530
            VE +FV S VTELPFFA+KVRLG+  G  + +  GPL E    G+ K    K  A  +++GVS
Sbjct:  293 VECAFVSSQVTELPFFATKVRLGR-NGIDEVYSLGPLNEYERIGLEKA--KKELAGSIEKGVS 352          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.166e-31
Identity = 61/109 (55.96%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            T++ KKL GVT LDVVRA TF                   HAG+TILPL SQ  P  +   ++I+ LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+GL G
Sbjct:  178 TFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRG 286          

HSP 2 Score: 43.1282 bits (100), Expect = 2.166e-31
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGKK*NPKLKAFHLKRGVSLA 536
            VE ++V S VTELPFFASKVRLG+ G  + + + GPL E    G+ K    K  +  + +GV+ A
Sbjct:  291 VECAYVASHVTELPFFASKVRLGRCGIDEVYGL-GPLNEYERMGLEKA--KKELSVSIHKGVTFA 352          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.786e-30
Identity = 62/112 (55.36%), Postives = 72/112 (64.29%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y+ KKLFGVTTLDVVRA TF                   HAGITILPL S+  P  N  DE+I+ LT R Q+ GTEVV+AKAG GSATLSMAYA A F ++ L+ L+G  DV
Sbjct:  219 YDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARFVESSLRALDGDGDV 330          

HSP 2 Score: 40.817 bits (94), Expect = 1.786e-30
Identity = 17/25 (68.00%), Postives = 23/25 (92.00%), Query Frame = 3
Query:  345 EWSFVQSTVTELPFFASKVRLGKEG 419
            E SFV+ST+T+LPFFAS+V++GK G
Sbjct:  332 ECSFVESTLTDLPFFASRVKIGKNG 356          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 5.535e-29
Identity = 60/109 (55.05%), Postives = 67/109 (61.47%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            TY+ K+L GVT LDVVRA TF                   HAGITILPL SQ  P  +   ++I+ LT R Q+GG EVVEAKAG GSATLSMAYA   FADACL  L G
Sbjct:  177 TYDPKRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTPKEIEYLTGRIQNGGPEVVEAKAGAGSATLSMAYAAVKFADACLHALRG 285          

HSP 2 Score: 41.2022 bits (95), Expect = 5.535e-29
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGKK*NPKLKAFHLKRGVS 530
            +E ++V S VTELPFFASKVRLG+  G ++    GPL +   + + K    K  A  +++G+S
Sbjct:  290 IECAYVASQVTELPFFASKVRLGRV-GVEEILPLGPLNDYERESLEKA--KKELAASIEKGIS 349          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.047e-26
Identity = 59/119 (49.58%), Postives = 72/119 (60.50%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVGGMVICT 361
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG     G+V C+
Sbjct:  161 YNPSKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKE---GVVECS 276          

HSP 2 Score: 33.4982 bits (75), Expect = 4.047e-26
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGKK*NPKLKAFHLKRG 524
            VE SFV+S  TE  +F++ + LGK+G  K   + G +P    K +     P+LKA  +K+G
Sbjct:  273 VECSFVKSQETECTYFSTPLLLGKKGIEKNLGI-GQIPSFEEKMISDA-IPELKA-SIKKG 330          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.561e-25
Identity = 58/119 (48.74%), Postives = 71/119 (59.66%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVGGMVICT 361
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG     G+V C+
Sbjct:  161 YNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKE---GVVECS 276          

HSP 2 Score: 32.3426 bits (72), Expect = 2.561e-25
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGKK*NPKLKAFHLKRG 524
            VE SFVQS  TE  +F++ + LGK+G  K   + G +     K + +   P+LKA  +K+G
Sbjct:  273 VECSFVQSKETECTYFSTPLLLGKKGLEKNLGI-GKITPFEEKMIAEA-IPELKA-SIKKG 330          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.338e-25
Identity = 59/119 (49.58%), Postives = 72/119 (60.50%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVGGMVICT 361
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG     G+V C+
Sbjct:  161 YNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKE---GVVECS 276          

HSP 2 Score: 30.0314 bits (66), Expect = 4.338e-25
Identity = 22/61 (36.07%), Postives = 34/61 (55.74%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGKK*NPKLKAFHLKRG 524
            VE SFV+S  TE  +F++ + LGK+G  K   + G +     K +     P+LKA  +K+G
Sbjct:  273 VECSFVKSQETECTYFSTPLLLGKKGIEKNLGI-GKVSSFEEKMISDA-IPELKA-SIKKG 330          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 4.338e-25
Identity = 59/119 (49.58%), Postives = 72/119 (60.50%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVGGMVICT 361
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG     G+V C+
Sbjct:  161 YNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKE---GVVECS 276          

HSP 2 Score: 30.0314 bits (66), Expect = 4.338e-25
Identity = 22/61 (36.07%), Postives = 34/61 (55.74%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGVGKK*NPKLKAFHLKRG 524
            VE SFV+S  TE  +F++ + LGK+G  K   + G +     K +     P+LKA  +K+G
Sbjct:  273 VECSFVKSQETECTYFSTPLLLGKKGIEKNLGI-GKVSSFEEKMISDA-IPELKA-SIKKG 330          
The following BLAST results are available for this feature:
BLAST of DY262819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDHG1_ARATH5.366e-3356.64Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG_CITLA5.366e-3356.88Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA1.544e-3256.88Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG2_ARATH2.166e-3155.96Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHP_ARATH1.786e-3055.36Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHG_SOYBN5.535e-2955.05Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHM_MACFA4.047e-2649.58Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_MOUSE2.561e-2548.74Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDHM_PONAB4.338e-2549.58Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_HUMAN4.338e-2549.58Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10AB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262819 ID=DY262819; Name=DY262819; organism=Citrus clementina; type=EST; length=787bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAGCAAAGGCT
GGAAAGGGTTCTGCAACATTGTCAATGGCTTATGCAGGAGCCATTTTTGC
TGATGCATGCCTGAAGGGTCTTAATGGTGTTCCAGATGTGGGTGGAATGG
TCATTTGTACAGTCAACTGTCACTGAGCTTCCCTTTTTTGCTTCAAAGGT
GAGGCTCGGAAAAGAAGGGGGTAGAAAAAAGTTCTGGGTTTGGGGTCCTC
TCCCCGAACTTCCAACAAAAGGGGTTGGAAAAAAATGAAACCCAAAACTC
AAAGCCTTCCATTTAAAAAGGGGAGTCAGTTTGGCCATGGCCAATTTAGC
CCACCCTTCCCAAAAAAAAAAATGGGTTCAAATTTTGGCAATTTTTTTTC
CCCAGGTGGTTAAATTTGTTGGCCCCAAGGGCCCCAGCCTTTTTTTGGGG
GGGTTTTTTCTTTTTTAAAAAGAGGCTTTTTTTAAAAAAAACCCAAAAAA
TTTTCTCCCAATAAATATAATATTCTCTTGTGGAAAAGGGGGTTTTAAGG
CGGGGGGGGGGAGGACAATTTTTTAAAAAAAGAAAAT
back to top