DY262819

Overview
NameDY262819
Unique NameDY262819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ECO57 (Malate dehydrogenase OS=Escherichia coli O157:H7 GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG 244
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ECO55 (Malate dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG 244
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ECO45 (Malate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG 244
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ECO27 (Malate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG 244
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ECO24 (Malate dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG 244
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_YERPY (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.842e-18
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ KLFG+TTLD +R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G  +V
Sbjct:  138 YDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNV 248

HSP 2 Score: 22.7126 bits (47), Expect = 1.842e-18
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 3 
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE S+V+       FFA  + LGK G
Sbjct:  249 VECSYVEGDGKYARFFAQPILLGKNG 274
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_YERPS (Malate dehydrogenase OS=Yersinia pseudotuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.842e-18
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ KLFG+TTLD +R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G  +V
Sbjct:  138 YDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNV 248

HSP 2 Score: 22.7126 bits (47), Expect = 1.842e-18
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 3 
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE S+V+       FFA  + LGK G
Sbjct:  249 VECSYVEGDGKYARFFAQPILLGKNG 274
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_YERPP (Malate dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.842e-18
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ KLFG+TTLD +R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G  +V
Sbjct:  138 YDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNV 248

HSP 2 Score: 22.7126 bits (47), Expect = 1.842e-18
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 3 
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE S+V+       FFA  + LGK G
Sbjct:  249 VECSYVEGDGKYARFFAQPILLGKNG 274
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_YERPN (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.842e-18
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ KLFG+TTLD +R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G  +V
Sbjct:  138 YDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNV 248

HSP 2 Score: 22.7126 bits (47), Expect = 1.842e-18
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 3 
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE S+V+       FFA  + LGK G
Sbjct:  249 VECSYVEGDGKYARFFAQPILLGKNG 274
[Close]
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_YERPG (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.842e-18
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ KLFG+TTLD +R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G  +V
Sbjct:  138 YDKNKLFGITTLDTIRSNTFVAELKGKQPQDIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESNV 248

HSP 2 Score: 22.7126 bits (47), Expect = 1.842e-18
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 3 
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE S+V+       FFA  + LGK G
Sbjct:  249 VECSYVEGDGKYARFFAQPILLGKNG 274
The following BLAST results are available for this feature:
BLAST of DY262819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_ECO571.746e-1846.30Malate dehydrogenase OS=Escherichia coli O157:H7 G... [more]
MDH_ECO551.746e-1846.30Malate dehydrogenase OS=Escherichia coli (strain 5... [more]
MDH_ECO451.746e-1846.30Malate dehydrogenase OS=Escherichia coli O45:K1 (s... [more]
MDH_ECO271.746e-1846.30Malate dehydrogenase OS=Escherichia coli O127:H6 (... [more]
MDH_ECO241.746e-1846.30Malate dehydrogenase OS=Escherichia coli O139:H28 ... [more]
MDH_YERPY1.842e-1844.64Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPS1.842e-1844.64Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPP1.842e-1844.64Malate dehydrogenase OS=Yersinia pestis (strain Pe... [more]
MDH_YERPN1.842e-1844.64Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPG1.842e-1844.64Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262819 ID=DY262819; Name=DY262819; organism=Citrus clementina; type=EST; length=787bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAGCAAAGGCT
GGAAAGGGTTCTGCAACATTGTCAATGGCTTATGCAGGAGCCATTTTTGC
TGATGCATGCCTGAAGGGTCTTAATGGTGTTCCAGATGTGGGTGGAATGG
TCATTTGTACAGTCAACTGTCACTGAGCTTCCCTTTTTTGCTTCAAAGGT
GAGGCTCGGAAAAGAAGGGGGTAGAAAAAAGTTCTGGGTTTGGGGTCCTC
TCCCCGAACTTCCAACAAAAGGGGTTGGAAAAAAATGAAACCCAAAACTC
AAAGCCTTCCATTTAAAAAGGGGAGTCAGTTTGGCCATGGCCAATTTAGC
CCACCCTTCCCAAAAAAAAAAATGGGTTCAAATTTTGGCAATTTTTTTTC
CCCAGGTGGTTAAATTTGTTGGCCCCAAGGGCCCCAGCCTTTTTTTGGGG
GGGTTTTTTCTTTTTTAAAAAGAGGCTTTTTTTAAAAAAAACCCAAAAAA
TTTTCTCCCAATAAATATAATATTCTCTTGTGGAAAAGGGGGTTTTAAGG
CGGGGGGGGGGAGGACAATTTTTTAAAAAAAGAAAAT
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