DY262819

Overview
NameDY262819
Unique NameDY262819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_PECCC (Malate dehydrogenase (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum GN=mdh PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 277
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  + +++++  LTKR Q+ GTEVVEAKAG GSATLSM
Sbjct:   60 YDKNKLFGVTTLDIIRSNTFVAELKGKQPQDINVPVIGGHSGVTILPLLSQV-PGISFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 149          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.497e-16
Identity = 52/108 (48.15%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            +  K LFGVTTLD VRA  F                   H+G TI+PL SQ      L  E   AL  R Q GG EVV+AKAG GSATLSMAYAGA  A + L+ L G
Sbjct:  166 HQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGHSGATIVPLLSQGG--VELTGEKRDALIHRIQFGGDEVVKAKAGAGSATLSMAYAGARMASSVLRALAG 271          

HSP 2 Score: 25.409 bits (54), Expect = 3.497e-16
Identity = 13/28 (46.43%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  345 EWSFVQSTVTE---LPFFASKVRLGKEG 419
            E +FV+S + +   + FFAS+V LGK+G
Sbjct:  277 ECTFVESPLYKDQGIDFFASRVTLGKDG 304          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHC_YEAST (Malate dehydrogenase, cytoplasmic OS=Saccharomyces cerevisiae GN=MDH2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 2
Query:   11 EKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXX------HAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG 289
            E+++ GVT LD+VRA TF                         H+G TI+PLFSQ+   + L ++ +K L  R Q GG EVV+AK GKGSATLSMA+AG
Sbjct:  172 ERRIMGVTKLDIVRASTFLREINIESGLTPRVNSMPDVPVIGGHSGETIIPLFSQSNFLSRLNEDQLKYLIHRVQYGGDEVVKAKNGKGSATLSMAHAG 270          
The following BLAST results are available for this feature:
BLAST of DY262819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_PECCC2.788e-1649.45Malate dehydrogenase (Fragment) OS=Pectobacterium ... [more]
MDHM_SCHPO3.497e-1648.15Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHC_YEAST6.427e-1344.44Malate dehydrogenase, cytoplasmic OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262819 ID=DY262819; Name=DY262819; organism=Citrus clementina; type=EST; length=787bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAGCAAAGGCT
GGAAAGGGTTCTGCAACATTGTCAATGGCTTATGCAGGAGCCATTTTTGC
TGATGCATGCCTGAAGGGTCTTAATGGTGTTCCAGATGTGGGTGGAATGG
TCATTTGTACAGTCAACTGTCACTGAGCTTCCCTTTTTTGCTTCAAAGGT
GAGGCTCGGAAAAGAAGGGGGTAGAAAAAAGTTCTGGGTTTGGGGTCCTC
TCCCCGAACTTCCAACAAAAGGGGTTGGAAAAAAATGAAACCCAAAACTC
AAAGCCTTCCATTTAAAAAGGGGAGTCAGTTTGGCCATGGCCAATTTAGC
CCACCCTTCCCAAAAAAAAAAATGGGTTCAAATTTTGGCAATTTTTTTTC
CCCAGGTGGTTAAATTTGTTGGCCCCAAGGGCCCCAGCCTTTTTTTGGGG
GGGTTTTTTCTTTTTTAAAAAGAGGCTTTTTTTAAAAAAAACCCAAAAAA
TTTTCTCCCAATAAATATAATATTCTCTTGTGGAAAAGGGGGTTTTAAGG
CGGGGGGGGGGAGGACAATTTTTTAAAAAAAGAAAAT
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