DY262819

Overview
NameDY262819
Unique NameDY262819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_HAEIG (Malate dehydrogenase OS=Haemophilus influenzae (strain PittGG) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.579e-21
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ    A   +E+I+ LTKR Q+ GTEVV AKAG GSATLSMA A A FA + +KGL+G
Sbjct:  138 YDKRKLFGVTTLDVLRSETFVAELKGLNVSRTSVPVIGGHSGVTILPLLSQVQ-YAKWNEEEIEPLTKRIQNAGTEVVNAKAGGGSATLSMAQAAARFARSLVKGLSG 244          

HSP 2 Score: 25.409 bits (54), Expect = 2.579e-21
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+       FF+  VRLGKEG
Sbjct:  248 VECTYVEGDGKYARFFSQPVRLGKEG 273          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.364e-21
Identity = 55/112 (49.11%), Postives = 68/112 (60.71%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ +LFGVTTLDV+R+ TF                   H+G+TILPL SQ  P  N  D ++ ALTKR Q+ GTEVVEAKAG GSATLSM  A A    + ++GL G  DV
Sbjct:  138 YDKNRLFGVTTLDVIRSNTFVAELKGKKPQEIEVPVIGGHSGVTILPLLSQI-PGVNFTDGELAALTKRIQNAGTEVVEAKAGGGSATLSMGQAAARLGLSLVRGLQGESDV 248          

HSP 2 Score: 25.0238 bits (53), Expect = 4.364e-21
Identity = 15/45 (33.33%), Postives = 23/45 (51.11%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTKGV 476
            VE ++V+       FFA  VRLGK G  ++  + G L +   K +
Sbjct:  249 VECAYVEGDGKYARFFAQPVRLGKNGVEERLNI-GELSDFEQKAL 292          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.365e-21
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ    A   +++I  LTKR Q+ GTEVVEAKAG GSATLSMA A A FA + ++GL+G
Sbjct:  138 YDKRKLFGVTTLDVLRSETFVAELKGLNVSRIAVPVIGGHSGVTILPLLSQVQ-YAEWEEDEIAPLTKRIQNAGTEVVEAKAGGGSATLSMAQAAARFALSLVQGLSG 244          

HSP 2 Score: 26.5646 bits (57), Expect = 4.365e-21
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+       FFA  VRLGKEG
Sbjct:  248 VECTYVEGDGKYARFFAQPVRLGKEG 273          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_VIBSL (Malate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.365e-21
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++++LFG+TTLDV+R++TF                   H+G+TILPL SQ        DE+I ALT R Q+ GTEVVEAKAG GSATLSM  A   F  A +K L G  +V
Sbjct:  138 YDKRRLFGITTLDVIRSETFVAELKDKDPGDIRVPVIGGHSGVTILPLLSQVEG-VEFTDEEIAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVKALQGEENV 248          

HSP 2 Score: 29.261 bits (64), Expect = 4.365e-21
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            +E ++V+      PFFA  V+LGKEG
Sbjct:  249 IECAYVEGEGEHAPFFAQPVKLGKEG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_HAEIE (Malate dehydrogenase OS=Haemophilus influenzae (strain PittEE) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.679e-21
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ    A   +++I+ LTKR Q+ GTEVV AKAG GSATLSMA A A FA + +KGL+G
Sbjct:  138 YDKRKLFGVTTLDVLRSETFVAELKGLNVSRTSVPVIGGHSGVTILPLLSQVQ-YAKWNEDEIEPLTKRIQNAGTEVVNAKAGGGSATLSMAQAAARFARSLVKGLSG 244          

HSP 2 Score: 25.409 bits (54), Expect = 5.679e-21
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+       FF+  VRLGKEG
Sbjct:  248 VECTYVEGDGKYARFFSQPVRLGKEG 273          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.250e-20
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ +LFGVTTLDV+RA+TF                   H+G+TILPL SQ     N +DE++ ALTKR Q+ GTEVVEAKAG GSATLSM  A   F  + ++GL G  +V
Sbjct:  138 YDKNRLFGVTTLDVIRAETFVAEAKGVDVASVKVNVIGGHSGVTILPLLSQIEG-VNFSDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAAFRFGMSLIRGLQGEANV 248          

HSP 2 Score: 22.7126 bits (47), Expect = 1.250e-20
Identity = 12/29 (41.38%), Postives = 14/29 (48.28%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
            VE ++V        FFA  V LGK G  K
Sbjct:  249 VECAYVDGGSEHAVFFAQPVLLGKNGVEK 277          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_HAEIN (Malate dehydrogenase OS=Haemophilus influenzae GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.250e-20
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ    A   +++I+ LTKR Q+ GTEV+ AKAG GSATLSMA A A FA + +KGL+G
Sbjct:  138 YDKRKLFGVTTLDVLRSETFVAELKGLNVSRTSVPVIGGHSGVTILPLLSQVQ-YAKWNEDEIEPLTKRIQNAGTEVLNAKAGGGSATLSMAQAAARFARSLVKGLSG 244          

HSP 2 Score: 25.409 bits (54), Expect = 1.250e-20
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+       FF+  VRLGKEG
Sbjct:  248 VECTYVEGDGKYARFFSQPVRLGKEG 273          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.250e-20
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ        +++I  LTKR Q+ GTEVVEAKAG GSATLSMA A A FA + ++GL+G
Sbjct:  138 YDKRKLFGVTTLDVLRSETFVAELKGLNVSRIAVPVIGGHSGVTILPLLSQVQ-YTEWKEDEIAPLTKRIQNAGTEVVEAKAGGGSATLSMAQAAARFALSLVQGLSG 244          

HSP 2 Score: 26.5646 bits (57), Expect = 1.250e-20
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+       FFA  VRLGKEG
Sbjct:  248 VECTYVEGDGKYARFFAQPVRLGKEG 273          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ACTPJ (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.866e-20
Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKA---NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDVVRAKTF                   H+G TILPL SQA  +    +   E+I+ALT R Q+ GTEVVEAKAG GSATLSMA +GA FA A  K L G
Sbjct:  138 YDKRKLFGVTTLDVVRAKTFTSELKEKHVETVKVPVIGGHSGPTILPLLSQALSEGLPLSFTQEEIEALTYRIQNAGTEVVEAKAGGGSATLSMAESGARFAVAVFKALLG 248          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ACTP7 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.866e-20
Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKA---NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDVVRAKTF                   H+G TILPL SQA  +    +   E+I+ALT R Q+ GTEVVEAKAG GSATLSMA +GA FA A  K L G
Sbjct:  138 YDKRKLFGVTTLDVVRAKTFTSELKEKHVETVKVPVIGGHSGPTILPLLSQALSEGLPLSFTQEEIEALTYRIQNAGTEVVEAKAGGGSATLSMAESGARFAVAVFKALLG 248          
The following BLAST results are available for this feature:
BLAST of DY262819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_HAEIG2.579e-2151.85Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_PHOLL4.364e-2149.11Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDH_HAES14.365e-2150.93Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_VIBSL4.365e-2147.32Malate dehydrogenase OS=Vibrio splendidus (strain ... [more]
MDH_HAEIE5.679e-2150.93Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_SHEAM1.250e-2049.11Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDH_HAEIN1.250e-2050.00Malate dehydrogenase OS=Haemophilus influenzae GN=... [more]
MDH_HAES21.250e-2050.00Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_ACTPJ1.866e-2054.05Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP71.866e-2054.05Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10AB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262819 ID=DY262819; Name=DY262819; organism=Citrus clementina; type=EST; length=787bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAGCAAAGGCT
GGAAAGGGTTCTGCAACATTGTCAATGGCTTATGCAGGAGCCATTTTTGC
TGATGCATGCCTGAAGGGTCTTAATGGTGTTCCAGATGTGGGTGGAATGG
TCATTTGTACAGTCAACTGTCACTGAGCTTCCCTTTTTTGCTTCAAAGGT
GAGGCTCGGAAAAGAAGGGGGTAGAAAAAAGTTCTGGGTTTGGGGTCCTC
TCCCCGAACTTCCAACAAAAGGGGTTGGAAAAAAATGAAACCCAAAACTC
AAAGCCTTCCATTTAAAAAGGGGAGTCAGTTTGGCCATGGCCAATTTAGC
CCACCCTTCCCAAAAAAAAAAATGGGTTCAAATTTTGGCAATTTTTTTTC
CCCAGGTGGTTAAATTTGTTGGCCCCAAGGGCCCCAGCCTTTTTTTGGGG
GGGTTTTTTCTTTTTTAAAAAGAGGCTTTTTTTAAAAAAAACCCAAAAAA
TTTTCTCCCAATAAATATAATATTCTCTTGTGGAAAAGGGGGTTTTAAGG
CGGGGGGGGGGAGGACAATTTTTTAAAAAAAGAAAAT
back to top