DY262819

Overview
NameDY262819
Unique NameDY262819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ACTP2 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.866e-20
Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKA---NLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDVVRAKTF                   H+G TILPL SQA  +    +   E+I+ALT R Q+ GTEVVEAKAG GSATLSMA +GA FA A  K L G
Sbjct:  138 YDKRKLFGVTTLDVVRAKTFTSELKEKHVETVKVPVIGGHSGPTILPLLSQALSEGLPLSFTQEEIEALTYRIQNAGTEVVEAKAGGGSATLSMAESGARFAVAVFKALLG 248          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_HAEI8 (Malate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.115e-20
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ    A   +++I+ L KR Q+ GTEVV AKAG GSATLSMA A A FA + +KGL+G
Sbjct:  138 YDKRKLFGVTTLDVLRSETFVAELKGLNVSRTSVPVIGGHSGVTILPLLSQVQ-YAKWNEDEIEPLAKRIQNAGTEVVNAKAGGGSATLSMAQAAARFARSLVKGLSG 244          

HSP 2 Score: 25.409 bits (54), Expect = 2.115e-20
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+       FF+  VRLGKEG
Sbjct:  248 VECTYVEGDGKYARFFSQPVRLGKEG 273          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_VIBPA (Malate dehydrogenase OS=Vibrio parahaemolyticus GN=mdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.751e-20
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++++LFG+TTLDV+R++TF                   H+G+TILPL SQ         E+++ALTKR Q+ GTEVVEAKAG GSATLSM  A   F  A ++ L G
Sbjct:  138 YDKRRLFGITTLDVIRSETFVAELKGKDPSDIRVPVIGGHSGVTILPLLSQVEG-VEFTAEEVEALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVRALQG 244          

HSP 2 Score: 28.8758 bits (63), Expect = 2.751e-20
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+      P+FA  V+LGKEG
Sbjct:  249 VECAYVEGDSEHAPYFAQPVKLGKEG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_HAEDU (Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.182e-20
Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLAD---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLDVVRAKTF                   H+G TILPL SQA  +  L D    +I++LT+R ++ GTEVVEAKAG GSATLSMA +GA FA A  K L G
Sbjct:  145 YDKSKLFGVTTLDVVRAKTFVSELKHKNVETVTVPVVGGHSGTTILPLLSQALAEGRLLDFSQTEIESLTQRIKNAGTEVVEAKAGGGSATLSMAESGARFALAVFKALLG 255          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_MANSM (Malate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.577e-20
Identity = 54/108 (50.00%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFG+TTLD++RA+TF                   H+G+TILPL SQ       ++E+I ALT R Q+ GTEVVEAKAG GSATLSMA A A FA A +K   G
Sbjct:  138 YDKRKLFGITTLDILRAETFIAELKGLDPTRVTIPVIGGHSGVTILPLLSQVQNVEWSSEEEIIALTHRIQNAGTEVVEAKAGGGSATLSMAQAAARFALALVKASQG 245          

HSP 2 Score: 24.2534 bits (51), Expect = 3.577e-20
Identity = 12/26 (46.15%), Postives = 15/26 (57.69%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+       FFA  VRLG EG
Sbjct:  249 VECAYVEGDGKYARFFAQPVRLGTEG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.654e-20
Identity = 54/108 (50.00%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFGVTTLDV+R++ F                   H+G TILPL SQ        +++IK LT R Q+ GTEVVEAKAG GSATLSM  A A FA + LKGL G
Sbjct:  138 YDKRKLFGVTTLDVIRSEAFVGELRGLNPENVNVPVIGGHSGTTILPLLSQVEG-VEFTEQEIKDLTHRIQNAGTEVVEAKAGGGSATLSMGQAAARFALSLLKGLQG 244          

HSP 2 Score: 25.7942 bits (55), Expect = 4.654e-20
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
            +E ++V+       FFA  VRLGK G  +
Sbjct:  248 IECTYVEGPGDNAKFFAQPVRLGKNGAEE 276          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_AERS4 (Malate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.053e-20
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++++LFGVTTLDV+RA+TF                   H+G+TILPL SQ    A+ + E++ A+TKR Q+ GTEVVEAKAG GSATLSM  A   F  + +KGL G  +V
Sbjct:  138 YDKRRLFGVTTLDVIRAETFVADAKGLNVDKVRVNVIGGHSGVTILPLLSQIEG-ASFSAEEVAAMTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLIKGLQGEANV 248          

HSP 2 Score: 22.3274 bits (46), Expect = 6.053e-20
Identity = 9/26 (34.62%), Postives = 14/26 (53.85%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            +E ++V+       FFA  + LGK G
Sbjct:  249 IECAYVEGDGKHATFFAQPILLGKNG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.053e-20
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++++LFGVTTLDV+RA+TF                   H+G+TILPL SQ    +  ADE + A+TKR Q+ GTEVVEAKAG GSATLSM  A   F  + +KGL G  +V
Sbjct:  138 YDKRRLFGVTTLDVIRAETFVAEAKGLNVDKVRVNVIGGHSGVTILPLLSQIEGASFTADE-VAAMTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLIKGLQGEANV 248          

HSP 2 Score: 22.3274 bits (46), Expect = 6.053e-20
Identity = 9/26 (34.62%), Postives = 14/26 (53.85%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            +E ++V+       FFA  + LGK G
Sbjct:  249 IECAYVEGDGKHATFFAQPILLGKNG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.053e-20
Identity = 54/109 (49.54%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            TY+  +LFGVTTLDV+R++ F                   H+G TILPL SQ    A  +DE++ ALT R Q+ GTEVVEAKAG GSATLSM  A A F  + +KGL G
Sbjct:  137 TYDAARLFGVTTLDVIRSEAFVAELKGLDVATVKVPVIGGHSGTTILPLLSQVEG-ATFSDEEVAALTPRIQNAGTEVVEAKAGGGSATLSMGAAAARFCMSLVKGLQG 244          

HSP 2 Score: 25.0238 bits (53), Expect = 6.053e-20
Identity = 10/26 (38.46%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            V++++V+    +  FFA  VRLG  G
Sbjct:  248 VDYAYVEGNGADAQFFAQPVRLGVNG 273          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.053e-20
Identity = 52/108 (48.15%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            YN+ KLFGVTTLDV+RA+TF                   H+G TILPL SQ        DE++ +LT R Q+ GTEVVEAKAG GSATLSM  A A F  + +  + G
Sbjct:  138 YNKNKLFGVTTLDVIRAETFVGNLRDLNPANVHVPVIGGHSGTTILPLLSQVEG-VEFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAAARFCLSLVSAMRG 244          

HSP 2 Score: 27.7202 bits (60), Expect = 6.053e-20
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE+++V++   +  FF+  VRLGK G
Sbjct:  248 VEYTYVETNSDDAQFFSHPVRLGKNG 273          
The following BLAST results are available for this feature:
BLAST of DY262819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_ACTP21.866e-2054.05Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_HAEI82.115e-2050.00Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_VIBPA2.751e-2046.30Malate dehydrogenase OS=Vibrio parahaemolyticus GN... [more]
MDH_HAEDU3.182e-2053.15Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh... [more]
MDH_MANSM3.577e-2050.00Malate dehydrogenase OS=Mannheimia succiniciproduc... [more]
MDH_IDILO4.654e-2050.00Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_AERS46.053e-2048.21Malate dehydrogenase OS=Aeromonas salmonicida (str... [more]
MDH_AERHH6.053e-2049.11Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]
MDH_COLP36.053e-2049.54Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDH_PSEA66.053e-2048.15Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262819 ID=DY262819; Name=DY262819; organism=Citrus clementina; type=EST; length=787bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAGCAAAGGCT
GGAAAGGGTTCTGCAACATTGTCAATGGCTTATGCAGGAGCCATTTTTGC
TGATGCATGCCTGAAGGGTCTTAATGGTGTTCCAGATGTGGGTGGAATGG
TCATTTGTACAGTCAACTGTCACTGAGCTTCCCTTTTTTGCTTCAAAGGT
GAGGCTCGGAAAAGAAGGGGGTAGAAAAAAGTTCTGGGTTTGGGGTCCTC
TCCCCGAACTTCCAACAAAAGGGGTTGGAAAAAAATGAAACCCAAAACTC
AAAGCCTTCCATTTAAAAAGGGGAGTCAGTTTGGCCATGGCCAATTTAGC
CCACCCTTCCCAAAAAAAAAAATGGGTTCAAATTTTGGCAATTTTTTTTC
CCCAGGTGGTTAAATTTGTTGGCCCCAAGGGCCCCAGCCTTTTTTTGGGG
GGGTTTTTTCTTTTTTAAAAAGAGGCTTTTTTTAAAAAAAACCCAAAAAA
TTTTCTCCCAATAAATATAATATTCTCTTGTGGAAAAGGGGGTTTTAAGG
CGGGGGGGGGGAGGACAATTTTTTAAAAAAAGAAAAT
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