DY262819
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.024e-19 Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
Y++ +LFGVTTLDV+R++TF H+G+TILPL SQ + DE++ ALTKR Q+ GTEVVEAKAG GSATLSM A F + ++GL G +V
Sbjct: 138 YDKNRLFGVTTLDVIRSETFIAELKGLNVADVNINVIGGHSGVTILPLLSQVKG-VSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANV 248 HSP 2 Score: 22.7126 bits (47), Expect = 1.024e-19 Identity = 11/29 (37.93%), Postives = 14/29 (48.28%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
VE ++V FFA + LGK G K
Sbjct: 249 VECAYVDGGSEHAQFFAQPILLGKNGVEK 277
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.331e-19 Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVGGMVIC 358
Y++ KLFGVTTLD++R+ TF H+G+TILPL SQ P + +++++ LTKR Q+ GTEVVEAKAG GSATLSM A A F + ++ L G G+V C
Sbjct: 138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPQDINVPVIGGHSGVTILPLLSQV-PGISFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG---ESGVVEC 251 HSP 2 Score: 25.0238 bits (53), Expect = 1.331e-19 Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEG 419
VE ++V+S FFA V LGK+G
Sbjct: 249 VECAYVESDGKHARFFAQPVLLGKDG 274
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHESW (Malate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=mdh PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.732e-19 Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
Y++ +LFGVTTLDV+R++TF H+G+TILPL SQ +DE++ +LTKR Q+ GTEVVEAKAG GSATLSM A F + ++GL G +V
Sbjct: 138 YDKNRLFGVTTLDVIRSETFIAELKGLNVADVKINVIGGHSGVTILPLLSQVEG-VTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANV 248 HSP 2 Score: 22.7126 bits (47), Expect = 1.732e-19 Identity = 12/29 (41.38%), Postives = 14/29 (48.28%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
VE ++V FFA V LGK G K
Sbjct: 249 VECAYVDGGSEHAEFFAQPVLLGKNGIEK 277
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHEPC (Malate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=mdh PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.732e-19 Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
Y++ +LFGVTTLDV+R++TF H+G+TILPL SQ +DE++ +LTKR Q+ GTEVVEAKAG GSATLSM A F + ++GL G +V
Sbjct: 138 YDKNRLFGVTTLDVIRSETFIAELKGLNVADVKINVIGGHSGVTILPLLSQVEG-VTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANV 248 HSP 2 Score: 22.7126 bits (47), Expect = 1.732e-19 Identity = 12/29 (41.38%), Postives = 14/29 (48.28%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
VE ++V FFA V LGK G K
Sbjct: 249 VECAYVDGGSEHAEFFAQPVLLGKNGIEK 277
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHEON (Malate dehydrogenase OS=Shewanella oneidensis GN=mdh PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.732e-19 Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
Y++ +LFGVTTLDV+R++TF H+G+TILPL SQ +DE++ +LTKR Q+ GTEVVEAKAG GSATLSM A F + ++GL G +V
Sbjct: 138 YDKNRLFGVTTLDVIRSETFIAELKGLNVADVKINVIGGHSGVTILPLLSQVEG-VTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANV 248 HSP 2 Score: 22.7126 bits (47), Expect = 1.732e-19 Identity = 12/29 (41.38%), Postives = 14/29 (48.28%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
VE ++V FFA V LGK G K
Sbjct: 249 VECAYVDGGSEHAEFFAQPVLLGKNGIEK 277
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_VIBHB (Malate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mdh PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.732e-19 Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
Y+++KLFGVTTLDV+R++TF H+G+TILPL SQ E+++ALTKR Q+ GTEVVEAKAG GSATLSM A F A ++ L G
Sbjct: 138 YDKRKLFGVTTLDVIRSETFVAELKDKDPGDVRVPVIGGHSGVTILPLLSQVEG-VEFTAEEVEALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVRALQG 244 HSP 2 Score: 24.6386 bits (52), Expect = 1.732e-19 Identity = 10/26 (38.46%), Postives = 16/26 (61.54%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEG 419
VE ++V+ +FA V+LGK+G
Sbjct: 249 VECAYVEGDSEHASYFAQPVKLGKDG 274
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ENTS8 (Malate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdh PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.063e-19 Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
Y++ KLFGVTTLD++R+ TF H+G+TILPL SQ P N D+++ LTKR Q+ GTEVVEAKAG GSATLSM A A F + ++ L G
Sbjct: 138 YDKNKLFGVTTLDIIRSNTFVAELKGKKPAELDVPVIGGHSGVTILPLLSQI-PGVNFTDQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG 244
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHESR (Malate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=mdh PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.253e-19 Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
Y++ +LFGVTTLDV+R++TF H+G+TILPL SQ +DE++ +LTKR Q+ GTEVVEAKAG GSATLSM A F + ++GL G ++
Sbjct: 138 YDKNRLFGVTTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVEG-VTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANI 248 HSP 2 Score: 22.7126 bits (47), Expect = 2.253e-19 Identity = 12/29 (41.38%), Postives = 14/29 (48.28%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
VE ++V FFA V LGK G K
Sbjct: 249 VECAYVDGGSEHAEFFAQPVLLGKNGIEK 277
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHESM (Malate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=mdh PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.253e-19 Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
Y++ +LFGVTTLDV+R++TF H+G+TILPL SQ +DE++ +LTKR Q+ GTEVVEAKAG GSATLSM A F + ++GL G ++
Sbjct: 138 YDKNRLFGVTTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVEG-VTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANI 248 HSP 2 Score: 22.7126 bits (47), Expect = 2.253e-19 Identity = 12/29 (41.38%), Postives = 14/29 (48.28%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
VE ++V FFA V LGK G K
Sbjct: 249 VECAYVDGGSEHAEFFAQPVLLGKNGIEK 277
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHESA (Malate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=mdh PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.253e-19 Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 2
Query: 5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
Y++ +LFGVTTLDV+R++TF H+G+TILPL SQ +DE++ +LTKR Q+ GTEVVEAKAG GSATLSM A F + ++GL G ++
Sbjct: 138 YDKNRLFGVTTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVEG-VTFSDEEVASLTKRIQNAGTEVVEAKAGGGSATLSMGQAACRFGMSLVRGLQGEANI 248 HSP 2 Score: 22.7126 bits (47), Expect = 2.253e-19 Identity = 12/29 (41.38%), Postives = 14/29 (48.28%), Query Frame = 3
Query: 342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
VE ++V FFA V LGK G K
Sbjct: 249 VECAYVDGGSEHAEFFAQPVLLGKNGIEK 277 The following BLAST results are available for this feature:
BLAST of DY262819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 153
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262819 ID=DY262819; Name=DY262819; organism=Citrus clementina; type=EST; length=787bpback to top |