DY262819

Overview
NameDY262819
Unique NameDY262819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_EDWI9 (Malate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.518e-19
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            YN  KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +L++ ++  LTKR Q+ GTEVVEAKAG GSATL+M  A A FA + ++ + G  +V
Sbjct:  138 YNPNKLFGVTTLDIIRSNTFVGELKHLDPATLDIPVIGGHSGVTILPLLSQI-PGVSLSEREVAELTKRIQNAGTEVVEAKAGGGSATLAMGQAAARFALSLVRAMQGDENV 248          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_CITK8 (Malate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.518e-19
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G  DV
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKLPTDVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKDV 248          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.809e-19
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y+++KLFG+TTLD +R++ F                   H+G+TILPL SQ  P     ++++K LT R Q+ GTEVVEAKAG GSATLSMAYA   F  +  + LNG
Sbjct:  138 YDKRKLFGITTLDTIRSEKFIVQAKNIEINRNDISVIGGHSGVTILPLLSQI-PHVEFTEQELKDLTHRIQNAGTEVVEAKAGAGSATLSMAYAAMRFVVSMARALNG 244          

HSP 2 Score: 22.3274 bits (46), Expect = 3.809e-19
Identity = 10/25 (40.00%), Postives = 14/25 (56.00%), Query Frame = 3
Query:  345 EWSFVQSTVTELPFFASKVRLGKEG 419
            E ++++       FFA  VRLGK G
Sbjct:  249 ECAYIEGDGKFARFFAQPVRLGKNG 273          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_PHOPR (Malate dehydrogenase OS=Photobacterium profundum GN=mdh PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.809e-19
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++++LFG+TTLD++R++TF                   H+G+TILPL SQ       +DE+IKALT R Q+ GTEVVEAKAG GSATLSM  A   F  + ++ L G
Sbjct:  138 YDKRRLFGITTLDIIRSETFVAELKGKTPSDIQVPVIGGHSGVTILPLLSQVEG-VEFSDEEIKALTPRIQNAGTEVVEAKAGGGSATLSMGQAAYRFGLSLVRALQG 244          

HSP 2 Score: 24.2534 bits (51), Expect = 3.809e-19
Identity = 14/35 (40.00%), Postives = 18/35 (51.43%), Query Frame = 3
Query:  315 RVLMVFQMWVEWSFVQSTVTELPFFASKVRLGKEG 419
            R L   Q  VE ++V+       FFA  V LGK+G
Sbjct:  240 RALQGEQGIVECAYVEGDGKHARFFAQPVLLGKDG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.955e-19
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ +LFGVTTLDV+R++TF                   H+G+TILPL SQ     + +DE++ ALT R Q+ GTEVVEAKAG GSATLSM  A   F  + ++GL G  +V
Sbjct:  138 YDKNRLFGVTTLDVIRSETFVAEAKGLNVADVNVNVIGGHSGVTILPLLSQIEG-VSFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANV 248          

HSP 2 Score: 22.7126 bits (47), Expect = 4.955e-19
Identity = 11/29 (37.93%), Postives = 14/29 (48.28%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
            VE ++V        FFA  + LGK G  K
Sbjct:  249 VECAYVDGGSEHAEFFAQPILLGKNGVEK 277          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.444e-19
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ +LFGVTTLDV+R++TF                   H+G+TILPL SQ     + +DE++ ALT R Q+ GTEVVEAKAG GSATLSM  A   F  + ++GL G  +V
Sbjct:  138 YDKNRLFGVTTLDVIRSETFVAEAKGLNVADVKVNVIGGHSGVTILPLLSQIEG-VSFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANV 248          

HSP 2 Score: 22.3274 bits (46), Expect = 6.444e-19
Identity = 11/26 (42.31%), Postives = 13/26 (50.00%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V        FFA  V LGK G
Sbjct:  249 VECAYVDGGSEHADFFAQPVLLGKNG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.838e-19
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ +LFGVTTLDV+R++TF                   H+G+TILPL SQ     + +DE++ ALT R Q+ GTEVVEAKAG GSATLSM  A   F  + ++GL G  +V
Sbjct:  138 YDKNRLFGVTTLDVIRSETFIAEAKGLNVDDVKINVIGGHSGVTILPLLSQVQG-VSFSDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEENV 248          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SALMU (Malate dehydrogenase (Fragment) OS=Salmonella muenchen GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.838e-19
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  +++   LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G  DV
Sbjct:  127 YDKNKLFGVTTLDIIRSNTFVAELKGKLPTEVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKDV 237          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.838e-19
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  + +D++I  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ + G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKSATEVEVPVIGGHSGVTILPLLSQI-PGVSFSDQEIADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRAMQG 244          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHEB2 (Malate dehydrogenase OS=Shewanella baltica (strain OS223) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.379e-19
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ +LFG+TTLDV+R++TF                   H+G+TILPL SQ    A   DE++ +LT R Q+ GTEVVEAKAG GSATLSM  A   F  + ++GL G  ++
Sbjct:  138 YDKNRLFGITTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVEG-ATFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANI 248          

HSP 2 Score: 22.7126 bits (47), Expect = 8.379e-19
Identity = 12/29 (41.38%), Postives = 14/29 (48.28%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
            VE ++V        FFA  V LGK G  K
Sbjct:  249 VECAYVDGGSEHAEFFAQPVLLGKNGIEK 277          
The following BLAST results are available for this feature:
BLAST of DY262819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_EDWI93.518e-1946.43Malate dehydrogenase OS=Edwardsiella ictaluri (str... [more]
MDH_CITK83.518e-1946.43Malate dehydrogenase OS=Citrobacter koseri (strain... [more]
MDH_ACTSZ3.809e-1946.30Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_PHOPR3.809e-1946.30Malate dehydrogenase OS=Photobacterium profundum G... [more]
MDH_SHEWM4.955e-1946.43Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SHELP6.444e-1946.43Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_SHESH7.838e-1946.43Malate dehydrogenase OS=Shewanella sediminis (stra... [more]
MDH_SALMU7.838e-1946.43Malate dehydrogenase (Fragment) OS=Salmonella muen... [more]
MDH_KLEP77.838e-1947.22Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_SHEB28.379e-1944.64Malate dehydrogenase OS=Shewanella baltica (strain... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262819 ID=DY262819; Name=DY262819; organism=Citrus clementina; type=EST; length=787bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAGCAAAGGCT
GGAAAGGGTTCTGCAACATTGTCAATGGCTTATGCAGGAGCCATTTTTGC
TGATGCATGCCTGAAGGGTCTTAATGGTGTTCCAGATGTGGGTGGAATGG
TCATTTGTACAGTCAACTGTCACTGAGCTTCCCTTTTTTGCTTCAAAGGT
GAGGCTCGGAAAAGAAGGGGGTAGAAAAAAGTTCTGGGTTTGGGGTCCTC
TCCCCGAACTTCCAACAAAAGGGGTTGGAAAAAAATGAAACCCAAAACTC
AAAGCCTTCCATTTAAAAAGGGGAGTCAGTTTGGCCATGGCCAATTTAGC
CCACCCTTCCCAAAAAAAAAAATGGGTTCAAATTTTGGCAATTTTTTTTC
CCCAGGTGGTTAAATTTGTTGGCCCCAAGGGCCCCAGCCTTTTTTTGGGG
GGGTTTTTTCTTTTTTAAAAAGAGGCTTTTTTTAAAAAAAACCCAAAAAA
TTTTCTCCCAATAAATATAATATTCTCTTGTGGAAAAGGGGGTTTTAAGG
CGGGGGGGGGGAGGACAATTTTTTAAAAAAAGAAAAT
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