DY262819

Overview
NameDY262819
Unique NameDY262819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_ERWCT (Malate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.379e-19
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVGGMVIC 358
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ +   + +++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G     G+V C
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPQDINVPVIGGHSGVTILPLLSQVSG-ISFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG---ENGVVEC 251          

HSP 2 Score: 24.6386 bits (52), Expect = 8.379e-19
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V+S      FFA  + LGK+G
Sbjct:  249 VECAYVESDGKHARFFAQPILLGKDG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_KLEVA (Malate dehydrogenase (Fragment) OS=Klebsiella variicola GN=mdh PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.024e-18
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  + +D+++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ + G
Sbjct:  108 YDKNKLFGVTTLDIIRSNTFVAELKGKSATEVEVPVIGGHSGVTILPLLSQI-PGVSFSDQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRAMQG 214          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.024e-18
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  + +D+++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ + G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKSATEVEVPVIGGHSGVTILPLLSQI-PGVSFSDQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRAMQG 244          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.024e-18
Identity = 56/112 (50.00%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            YN KKLFGVTTLD +RA  F                   H+GITI+PL SQ   K  ++D+    L  R Q GG EVV+AK G GSATLSMA+AGA FA+A L G  G  DV
Sbjct:  156 YNPKKLFGVTTLDSIRAARFISEVENTDPTQERVNVIGGHSGITIIPLISQTNHKL-MSDDKRHELIHRIQFGGDEVVKAKNGAGSATLSMAHAGAKFANAVLSGFKGERDV 266          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_MORS5 (Malate dehydrogenase OS=Moritella sp. (strain 5710) GN=mdh PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.089e-18
Identity = 54/119 (45.38%), Postives = 70/119 (58.82%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVGGMVICT 361
            Y+++KLFG+TTLDV+R++TF                   H+G+TILPL SQ         E++ ALT R Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G     G+V CT
Sbjct:  138 YDKRKLFGITTLDVIRSETFVSALKGISLADVEVPVIGGHSGVTILPLLSQVKG-VEFTAEEVVALTARIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEK---GIVECT 252          

HSP 2 Score: 23.483 bits (49), Expect = 1.089e-18
Identity = 15/42 (35.71%), Postives = 20/42 (47.62%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPT 467
            VE ++V        FFA  V LGK  G ++   +G L E  T
Sbjct:  249 VECTYVDGGSEHATFFAQPVLLGK-NGVEEVLAYGELSEFET 289          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHEPW (Malate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.090e-18
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ +LFGVTTLDV+R++TF                   H+G+TILPL SQ     +  DE++ ALT R Q+ GTEVVEAKAG GSATLSM  A   F  + ++GL G  +V
Sbjct:  138 YDKNRLFGVTTLDVIRSETFVAAAKGLNVADVKVNVIGGHSGVTILPLLSQIEG-VSFTDEEVAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANV 248          

HSP 2 Score: 21.9422 bits (45), Expect = 1.090e-18
Identity = 11/26 (42.31%), Postives = 13/26 (50.00%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEG 419
            VE ++V        FFA  V LGK G
Sbjct:  249 VECAYVDGGSEHAEFFAQPVVLGKNG 274          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.090e-18
Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            TY+ K++FG+TTLDV+R++ F                   H+G TILPL SQ     +  DE++ ALT R Q+ GTEVV AKAG GSATLSM  A A F  + +KGL G
Sbjct:  137 TYDAKRVFGITTLDVIRSEAFVAELKGVDVATVKVPVIGGHSGTTILPLLSQVEG-VSFTDEEVAALTPRIQNAGTEVVNAKAGGGSATLSMGAAAARFCMSLVKGLQG 244          

HSP 2 Score: 23.483 bits (49), Expect = 1.090e-18
Identity = 14/43 (32.56%), Postives = 23/43 (53.49%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRKKFWVWGPLPELPTK 470
            V++++V     +  +FA  VRLGK  G ++   +G L    TK
Sbjct:  248 VDYAYVAVENGDAEYFAHPVRLGK-NGVEEILSYGELSAFETK 289          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.417e-18
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV 340
            Y++ +LFG+TTLDV+R++TF                   H+G+TILPL SQ        DE++ A+T R Q+ GTEVVEAKAG GSATLSM  A   F  + ++GL G  +V
Sbjct:  138 YDKNRLFGITTLDVIRSETFIAELKGLNVADVKVNVIGGHSGVTILPLLSQVEG-VTFTDEEVAAMTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLSLVRGLQGEANV 248          

HSP 2 Score: 22.7126 bits (47), Expect = 1.417e-18
Identity = 11/29 (37.93%), Postives = 14/29 (48.28%), Query Frame = 3
Query:  342 VEWSFVQSTVTELPFFASKVRLGKEGGRK 428
            VE ++V        FFA  + LGK G  K
Sbjct:  249 VECAYVDGGSEHATFFAQPILLGKNGVEK 277          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG 244          
BLAST of DY262819 vs. ExPASy Swiss-Prot
Match: MDH_SHIFL (Malate dehydrogenase OS=Shigella flexneri GN=mdh PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 328
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQG 244          
The following BLAST results are available for this feature:
BLAST of DY262819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDH_ERWCT8.379e-1944.07Malate dehydrogenase OS=Erwinia carotovora subsp. ... [more]
MDH_KLEVA1.024e-1846.30Malate dehydrogenase (Fragment) OS=Klebsiella vari... [more]
MDH_KLEP31.024e-1846.30Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDHM_YEAST1.024e-1850.00Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDH_MORS51.089e-1845.38Malate dehydrogenase OS=Moritella sp. (strain 5710... [more]
MDH_SHEPW1.090e-1846.43Malate dehydrogenase OS=Shewanella piezotolerans (... [more]
MDH_PSEHT1.090e-1846.79Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_SHEFN1.417e-1844.64Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDH_SHISS1.746e-1846.30Malate dehydrogenase OS=Shigella sonnei (strain Ss... [more]
MDH_SHIFL1.746e-1846.30Malate dehydrogenase OS=Shigella flexneri GN=mdh P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262819 ID=DY262819; Name=DY262819; organism=Citrus clementina; type=EST; length=787bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAGCAAAGGCT
GGAAAGGGTTCTGCAACATTGTCAATGGCTTATGCAGGAGCCATTTTTGC
TGATGCATGCCTGAAGGGTCTTAATGGTGTTCCAGATGTGGGTGGAATGG
TCATTTGTACAGTCAACTGTCACTGAGCTTCCCTTTTTTGCTTCAAAGGT
GAGGCTCGGAAAAGAAGGGGGTAGAAAAAAGTTCTGGGTTTGGGGTCCTC
TCCCCGAACTTCCAACAAAAGGGGTTGGAAAAAAATGAAACCCAAAACTC
AAAGCCTTCCATTTAAAAAGGGGAGTCAGTTTGGCCATGGCCAATTTAGC
CCACCCTTCCCAAAAAAAAAAATGGGTTCAAATTTTGGCAATTTTTTTTC
CCCAGGTGGTTAAATTTGTTGGCCCCAAGGGCCCCAGCCTTTTTTTGGGG
GGGTTTTTTCTTTTTTAAAAAGAGGCTTTTTTTAAAAAAAACCCAAAAAA
TTTTCTCCCAATAAATATAATATTCTCTTGTGGAAAAGGGGGTTTTAAGG
CGGGGGGGGGGAGGACAATTTTTTAAAAAAAGAAAAT
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