Sequencing of 30 Citrus accessions

Mikeal Roose and Yoko Eck from the University of California, Riverside sequenced 30 Citrus accessions for the development of a SNP array for Citrus.  The data was deposited in NCBI under the BioProject PRJNA357637, and SRP095606. The Roose lab provided the BAM files of each of the 30 accessions aligned to the Citrus clementina v1.0 genome by Albert Wu (JGI).  The data is available for visualization in the C. clementina v1.0 JBrowse.  The BAM and BAI files are available to download on the CGD data repository. Below is a table that explains what the three letter abbreviations stand for for the file names.

This data was also used in Genomics of the origin and evolution of Citrus (Wu et al, 2018).