DY271187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.851e-57 Identity = 99/115 (86.09%), Postives = 111/115 (96.52%), Query Frame = 2 Query: 215 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 559 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+V+ TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC++ERVQYV PKR Sbjct: 1 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=3 SV=3) HSP 1 Score: 219.55 bits (558), Expect = 1.567e-56 Identity = 97/115 (84.35%), Postives = 108/115 (93.91%), Query Frame = 2 Query: 215 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 559 MG APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+VD TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C+ RVQYVPPKR Sbjct: 1 MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_NEUCR (Transcription elongation factor spt-4 OS=Neurospora crassa GN=spt-4 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.603e-19 Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 2 Query: 260 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550 LRAC+ C +V TY +FR+ GC NC F + +++ CT+ F GII++ +P +SW A+W R+ +V G Y VS LP+D++ ED+ +QY+P Sbjct: 14 LRACMVCSIVMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVAKWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIP 111
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_MACFA (Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2 Query: 236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544 +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_HUMAN (Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2 Query: 236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544 +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_BOVIN (Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2 Query: 236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544 +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT41_MOUSE (Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2 Query: 236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544 +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.297e-18 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2 Query: 236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544 +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18 Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 2 Query: 236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP 502 +P H LRACL C LVKT DQF GC+NC + +M + E V +CT+ +F+G+I++M P SW A+W RIG F PG Y + V+ LP Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMMSPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_XENLA (Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2 Query: 236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544 +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI+++M P SW ++W RI F PG Y ++V+ LP+ + + V Y Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIVAMMSPDDSWVSKWQRITNFKPGVYAVSVTGRLPQGIVRELKSRGVVY 108 The following BLAST results are available for this feature:
BLAST of DY271187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >DY271187 ID=DY271187; Name=DY271187; organism=Citrus clementina; type=EST; length=769bpback to top |