DY271432

Overview
NameDY271432
Unique NameDY271432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271432_ssr16 microsatellite DY271432_ssr16:16..25. BLAST: Citrus ESTs to Prunus persica proteins V1
DY271432_ssr551 microsatellite DY271432_ssr551:551..562. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8417 contig Ccv1_Contig8417:249..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.327e-70
Identity = 131/140 (93.57%), Postives = 135/140 (96.43%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            +ESVQCF R+KTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSIA+ALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    6 IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.723e-67
Identity = 126/148 (85.14%), Postives = 138/148 (93.24%), Query Frame = 3
Query:   54 MATAKAGPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            MAT  A   ESVQCF R+KTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIA+ALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:    1 MATQPA--TESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.250e-67
Identity = 125/148 (84.46%), Postives = 138/148 (93.24%), Query Frame = 3
Query:   54 MATAKAGPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            MAT  A   ESVQCF R+KTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIA+ALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:    1 MATQPA--TESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.551e-67
Identity = 122/139 (87.77%), Postives = 135/139 (97.12%), Query Frame = 3
Query:   81 ESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            ESVQCF R+KTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQSIA+ALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:    7 ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.972e-64
Identity = 120/140 (85.71%), Postives = 135/140 (96.43%), Query Frame = 3
Query:   78 VESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            VESVQCF R+KTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +FAGVDMRIRVKGGG+TSQIYAIRQSIA+ALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:    4 VESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.363e-63
Identity = 120/148 (81.08%), Postives = 133/148 (89.86%), Query Frame = 3
Query:   54 MATAKAGPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            MAT  A   ESVQCF R+KTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRFAGVDMRIR  GGG+TS++YAIRQSIA+ALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARFQKSYR
Sbjct:    1 MATQPAK--ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.369e-61
Identity = 113/141 (80.14%), Postives = 126/141 (89.36%), Query Frame = 3
Query:   75 PVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            P  +VQCF R+KTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IA+ALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.369e-61
Identity = 113/141 (80.14%), Postives = 126/141 (89.36%), Query Frame = 3
Query:   75 PVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            P  +VQCF R+KTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IA+ALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.119e-58
Identity = 106/142 (74.65%), Postives = 127/142 (89.44%), Query Frame = 3
Query:   72 GPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            GP++SVQ F R+KTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI++ALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of DY271432 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 226.483 bits (576), Expect = 1.119e-58
Identity = 106/142 (74.65%), Postives = 127/142 (89.44%), Query Frame = 3
Query:   72 GPVESVQCFRRQKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAQALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 497
            GP++SVQ F R+KTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI++ALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
The following BLAST results are available for this feature:
BLAST of DY271432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RS16_GOSHI6.327e-7093.5740S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS161_ARATH1.723e-6785.1440S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH2.250e-6784.4640S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS16_FRIAG8.551e-6787.7740S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS16_TORRU3.972e-6485.7140S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS162_ARATH3.363e-6381.0840S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_ORYSJ5.369e-6180.1440S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI5.369e-6180.1440S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_RAT1.119e-5874.6540S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]
RS16_PIG1.119e-5874.6540S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271432 ID=DY271432; Name=DY271432; organism=Citrus clementina; type=EST; length=716bp
GGTTTCTCTGTTTGTCGCGCGCGCGCTACCCTCATAGCAAACCCTAACAG
AAAATGGCCACAGCAAAAGCAGGTCCAGTGGAATCTGTACAATGCTTCCG
CCGCCAGAAGACTGCGGTCGCCGTGACTTACTGCAAGCGCGGTCGTGGGT
TGATCAAGATTAACGGCTGCCCGATCGAGTTAGTCGAGCCGGAGATCCTC
CGCTTCAAGGCATACGAGCCAATTCTCTTGCTCGGGCGACACCGATTCGC
CGGCGTGGACATGAGAATCCGCGTGAAGGGCGGGGGACACACGTCGCAGA
TCTACGCCATCCGTCAGAGCATCGCCCAGGCTCTCGTGGCTTTCTACCAG
AAGTATGTTGACGAGCAGAGCAAGAAGGAGATTAAGGACATTCTCGTTAG
GTACGACAGGACCCTGCTTGTGGCAGACCCACGCCGGTGCGAGCCCAAGA
AGTTCGGTGGACGTGGCGCTAGGGCTCGGTTCCAGAAGAGTTACCGTTGA
GCGGGAATGCAAGGAAGCGAAACGAAACGGCTTTTCGTTTTGCTATTTTA
GTTTGTTTGTTTTACTTTTTTATGAAATTTTGGTTATTTTGAGACTGGAT
CATTAAATGTTAGTAGTTTATGAGAAATTAAGGCTTTGGTGAGGCCGTAA
TGAATTACTGTTGAAAGGTAAATTTTTGTAATGGAAGATATGGTTGTCCA
ATGCCTGTTTTAGTGT
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