DY271435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 4.150e-58 Identity = 128/218 (58.72%), Postives = 147/218 (67.43%), Query Frame = 3 Query: 216 SSPSRFVRNVAVSSEFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGFRVCDLPFLLKRLTMPLNSLNGVDL 830 S SRF RNVA++SEF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMVEVIYDK+TGRSRGFGFVTMSSV EVEAAAQQFNGYEL+GRPLRVN NRVYVGNLSWGVDD+ALE+LF EQGKV+EA+V+YDR+SGRS GF + + + SL+G DL Sbjct: 54 SPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD-SSQEVQNAIKSLDGADL 270 HSP 2 Score: 72.4034 bits (176), Expect = 4.496e-12 Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 3 Query: 297 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 GS +++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A + +G +L+GR +RV+ Sbjct: 197 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 1.130e-55 Identity = 126/206 (61.17%), Postives = 141/206 (68.45%), Query Frame = 3 Query: 225 SRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGFRVCDLPFLLKRLTMPLNSLNGVDL 830 SRFVR V +S +FDQ ED+ +DG NFSPDLK+FVGNLPFS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN NRVYVGNL+WGVD ALETLF EQGKV++AKVVYDR+SGRS GF + + + SL+GVDL Sbjct: 53 SRFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN--SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYS-SAEEVNNAIESLDGVDL 254 HSP 2 Score: 77.0258 bits (188), Expect = 1.826e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 297 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 181 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 4.020e-53 Identity = 126/216 (58.33%), Postives = 142/216 (65.74%), Query Frame = 3 Query: 213 PSS--PSRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN----XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGFRVCDLPFLLKRLTMPLNSLNGVDL 830 PSS SRFVR V + +FDQ ED+ ++G NFSPDLK+FVGNL FS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN NRVYVGNL+WGVD ALETLF EQGKV++AKVVYDR+SGRS GF + + + SL+GVDL Sbjct: 47 PSSCFSSRFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYS-SAEEVNNAIESLDGVDL 260 HSP 2 Score: 77.0258 bits (188), Expect = 1.826e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 297 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 187 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 9.902e-52 Identity = 122/219 (55.71%), Postives = 137/219 (62.56%), Query Frame = 3 Query: 225 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGFRVCDLPFLLKRLTMPLNSLNGVDL 830 S F VA+S FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVEMVEVIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRS GF K + ++SLNGVDL Sbjct: 57 SSFSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYS-SSKEVNDAIDSLNGVDL 273 HSP 2 Score: 76.2554 bits (186), Expect = 3.114e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 297 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 200 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 4.914e-51 Identity = 119/219 (54.34%), Postives = 138/219 (63.01%), Query Frame = 3 Query: 225 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGFRVCDLPFLLKRLTMPLNSLNGVDL 830 S F VA+S +FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVE+VEVIYDK++GRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRS GF K + ++SLNG+DL Sbjct: 58 SSFSTRVALS-DFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYS-SAKEVNDAIDSLNGIDL 274 HSP 2 Score: 77.0258 bits (188), Expect = 1.826e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 297 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 201 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 3.530e-41 Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 3 Query: 222 PSRFVRNVAVSSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 PSRFVRNVAVSS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMVEVIYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGYE EGRPLRVN Sbjct: 60 PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173 HSP 2 Score: 87.0409 bits (214), Expect = 1.764e-16 Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 3 Query: 627 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGFRVCDLPFLLKRLTMPLNSLNGVDL 830 NR+YVGNLSWGVDD+ALE LF EQGKV+EA+V+YDR+SGRS GF L + + +NSLNG DL Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLS-SSQEVQKAINSLNGADL 323 HSP 3 Score: 78.1814 bits (191), Expect = 8.194e-14 Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 297 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 GS +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A NG +L+GR +RV+ Sbjct: 250 GSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.780e-35 Identity = 84/176 (47.73%), Postives = 104/176 (59.09%), Query Frame = 3 Query: 231 FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGF 758 FV V + E D+ E +E+ D KLFVGNLP+ VDS LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A + +N Y++ GR L VN R+YVGN+ WG+DD LE LF E GKV+ A+VVYDRE+GRS GF Sbjct: 107 FVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSY---------RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGF 273 HSP 2 Score: 80.1073 bits (196), Expect = 2.156e-14 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 306 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 F +++VGN+P+ +D A+L LF G V V+YD+ TGRSRGFGFVTM+S E+ A +G L+GR +RVN Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVN 304
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.588e-33 Identity = 81/159 (50.94%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 291 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGF 758 E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE E A + NGY+++GR L VN RVYVGNL W VD LE LF E GKV+ A+VV DRE+GRS GF Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSC---------RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGF 192 HSP 2 Score: 81.6481 bits (200), Expect = 7.412e-15 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3 Query: 303 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 +F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS EV A +G L+GR +RVN Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVN 223
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.029e-32 Identity = 84/169 (49.70%), Postives = 102/169 (60.36%), Query Frame = 3 Query: 255 SEFDQEEDLLSDE-DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGF 758 SE D E +S+ + S + KLFVGNL + V+S LA LFE AG VE+ EVIY++ T +SRGFGFVTMSSV+E E A ++FN Y+L GR L VN RVYVGNL W VD+ LE LF E GKV+EA+VVYDRE+GRS GF Sbjct: 128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF---------RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287 HSP 2 Score: 85.5001 bits (210), Expect = 5.133e-16 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3 Query: 306 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 + P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+ A +G LEGR +RVN Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
BLAST of DY271435 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.293e-32 Identity = 84/194 (43.30%), Postives = 107/194 (55.15%), Query Frame = 3 Query: 225 SRFVRNVAVSSEFDQEEDLLSDEDGSNF----------------SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSPGF 758 ++F V+V SE D L E G +F S D KLFVGNLP+ +DS LA LF+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE + A + ++ Y+L GR L VN R+YVGN+ W +DD LE +F E GKV+ A+VV+DRESGRS GF Sbjct: 50 TQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTY---------RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGF 234 HSP 2 Score: 79.7221 bits (195), Expect = 2.816e-14 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 306 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 542 F P +++VGN+P+ +D A+L +F G V V++D+ +GRSRGFGFVTMSS E+ A +G L+GR +RVN Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265 The following BLAST results are available for this feature:
BLAST of DY271435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >DY271435 ID=DY271435; Name=DY271435; organism=Citrus clementina; type=EST; length=981bpback to top |