DY305089

Overview
NameDY305089
Unique NameDY305089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1166
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305089 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.933e-24
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   13 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGX*QMLRNGAW 330
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG    + +  W
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877          
BLAST of DY305089 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.933e-24
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   13 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGX*QMLRNGAW 330
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG    + +  W
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877          
BLAST of DY305089 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.933e-24
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   13 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGX*QMLRNGAW 330
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG    + +  W
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877          
BLAST of DY305089 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.436e-23
Identity = 47/115 (40.87%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   13 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGX*QMLRNGAWDQCMSALEP 357
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NP G +   +F C A+ASW   + ++L +   ++LHG    +    W Q      P
Sbjct:  762 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEENWQQFSEQFPP 875          
BLAST of DY305089 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.968e-20
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   13 KSLIENS----------AITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGX*QMLRNGAWDQCMSALEP 357
            K+L+EN+          AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NP G +   +F C A+ASW   + ++L +   ++LHG    +    W Q      P
Sbjct:  762 KTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEDNWQQFSEQFPP 885          
BLAST of DY305089 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.998e-18
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    7 LNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGX*QMLRNGAWDQ 336
            LN+ ++EN+A+T+GRL  V P  +SP ++ F+Q WC+A+    DD EK+ AFRG+  ++  NP+GAL  LV++C A+ASW +++  +L+    ++LH   +    G W Q
Sbjct:  799 LNRGVLENTAVTIGRLGIVSPADISPFVDKFIQCWCMAIRRKTDDIEKDSAFRGMWLIINNNPNGALRHLVYICDAVASWDKMQ-PDLYEAYFKLLHMY-KTSMGGVWAQ 906          
BLAST of DY305089 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.972e-12
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   10 NKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGX*QMLRNGA 327
            N +++EN AIT+GRL    PELV+PH+E F QPW   +  + ++ EK+ AFRG C ++  NP  ALS L+ M     + +E  S EL +   ++L G  ++    A
Sbjct:  788 NTTVLENVAITIGRLGVYNPELVAPHLELFYQPWFEIIKTVGENEEKDSAFRGFCNILACNPQ-ALSYLLPMFVLCVAEYENPSAELRDMFQKILQGSVELFNGKA 892          
The following BLAST results are available for this feature:
BLAST of DY305089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TNPO1_MOUSE2.933e-2444.34Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2[more]
TNPO1_HUMAN2.933e-2444.34Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
TNPO1_BOVIN2.933e-2444.34Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2[more]
TNPO2_MOUSE9.436e-2340.87Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1[more]
TNPO2_HUMAN1.968e-2037.60Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3[more]
TNPO_DICDI6.998e-1840.00Transportin OS=Dictyostelium discoideum GN=tnpo PE... [more]
IMB2_SCHPO1.972e-1238.68Importin subunit beta-2 OS=Schizosaccharomyces pom... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2BC12RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305089 ID=DY305089; Name=DY305089; organism=Citrus clementina; type=EST; length=1166bp
GAGGAGTTGAACAAGTCACTCATAGAAAATAGTGCAATTACACTTGGAAG
GCTTGCGTGGGTTTGCCCAGAACTTGTGTCGCCCCACATGGAACATTTCA
TGCAACCTTGGTGCATTGCTTTGTCTATGATCCGTGATGATACTGAAAAG
GAGGATGCATTCCGAGGTCTTTGTGCAATGGTAAAAGCGAATCCATCAGG
GGCGCTAAGTTCACTTGTTTTCATGTGCAGAGCCATTGCTAGTTGGCATG
AAATAAGAAGTGAAGAGCTACATAATGAAGTTTGCCAGGTGTTGCATGGT
TANTAACAGATGCTTAGAAATGGAGCATGGGACCAGTGTATGTCTGCTTT
GGAGCCCCAGTGAANGGACAGCTGTCAAATATCANGTGTAATAGTCCCTG
NNTCTTGGTGCTGANCTGTCNTCAGTATGTGGTTTCTCAAATTTGTGCAT
TGCCAATGCGTCTGTCCGGTAATCTGCAATCCCTGATGATATTCGAGGTG
TCATTCATTTAACATAAAATAAAATTTTGGCCAAAATTTTTCAAGCATGA
CAGTATAATCACCTTAATCATTAAGCTTGAAATTGCTATCCCCTCCAAAC
ATTTAATATGCATCCGTCCTCCCCCCAACCATGGGGTCTTAAAAATGAAC
AACCCGAGGTTGGAAGTGGAAAGTTAAGGGGGGCACCTTTCAAGCTTTGG
GGAAAAATAACCTAAACTTTAATGTTTCAGGGGGACCAAAATATTAAATA
GGGTTTGGGTCCGGGGTTTAAATTTCGGTCAAATTTTCCTATCCTATTAT
TTCACTGAAGGCCCGGTTGGTTTTCACAGATTTGTACAAGGGCTTTAGCA
TCAATTATTATAGTCATCGTGAGTGTGTAAATCCTGTACTTCAATGTCTG
AACAATTAATCTTATGCATTCACATTGTGAAATTTTGGGTTGGGGGTCAA
TAAAATGGTTCTGAACCTTCGAAATTAAAAAAAAAAAAAAAAAACCCCAG
GGGGGGGCCCCGTACCCATTCTCCCCTAAAATGAACCGAAAAAAATTTCC
CGGGCCCTCCCTTTTTACCCCCCCTTGCATGGGAAAAACCCCCGGGGCTT
TCCCCACAATTTAACCCCCTTTTGCACAAAATCTCCCCCCTTTTCCCCCC
CCCCCGGGGGGGAATA
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