DY305169

Overview
NameDY305169
Unique NameDY305169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1248
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305169_ssr910 microsatellite DY305169_ssr910:910..921. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305169 vs. ExPASy Swiss-Prot
Match: BRE_DANRE (BRCA1-A complex subunit BRE OS=Danio rerio GN=bre PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.649e-12
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  105 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEETLERQVSEAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 533
            KL  +P+++ +L     + +P +  G C+ +Y+P + + L  +V   +     RR +I A    FG  + E D+V + K    +    F FLV   L   FP+ QP+L  QS  +F S G  + S +   YP+SPRW+ ++MA+R
Sbjct:  221 KLYLSPSIEHALGGSSALHIPAFPSGGCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLSHFGMGVVEYDAVGFTKLTLLLMWKDFCFLVHVDLPLYFPRDQPTLTFQSIYHFTSSGQ-LYSQVQKSYPYSPRWDGNEMAKR 364          
BLAST of DY305169 vs. ExPASy Swiss-Prot
Match: BRE_XENTR (BRCA1-A complex subunit BRE OS=Xenopus tropicalis GN=bre PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.183e-12
Identity = 44/145 (30.34%), Postives = 75/145 (51.72%), Query Frame = 3
Query:  105 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEETLERQVSEAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 533
            KL  +P ++ +L     + +P +  G C+ +Y+P + + L  +V   +     RR +I A    FG  + E D+  + K    ++   F FLV   L   FP+ QP+L  QS  +F + G  + S    +YP+SPRW+ ++MA+R
Sbjct:  218 KLFLSPRIEHALGGSSALHIPAFPSGSCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLSWKDFCFLVHIDLPLYFPRDQPTLTFQSVYHFTNSGQ-LYSQAQKNYPYSPRWDGNEMAKR 361          
BLAST of DY305169 vs. ExPASy Swiss-Prot
Match: BRE_BRAFL (BRCA1-A complex subunit BRE OS=Branchiostoma floridae GN=BRE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.396e-11
Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = 3
Query:  153 VKLPPWLDGMCMAEYLPHLEETLERQVSEAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFN-SQGMPIKSPLLTDYPWSPRWEHSQMAERTFEFLVDESVNFKK 575
            +++P +  G C+ +Y+P +++ L++Q+   V   + RR ++ A    FG  + E D+  + K    +    F F++   L ++FP+  P    QS  + + + G P  S +   YP+SPRW   +MA R   F++D    FKK
Sbjct:  234 LRIPRFPTGGCLMDYVPQVQDFLQKQIDHIVEGYQRRREYVAAFISRFGGSVLEYDAESFTKLSLVLEWNEFFFVLHIELPSRFPQDMPVFTFQSCYHLSKTNGEPYVS-VQKSYPYSPRWTGEEMAHRAKLFILDFIPQFKK 375          
BLAST of DY305169 vs. ExPASy Swiss-Prot
Match: BRE_CHICK (BRCA1-A complex subunit BRE OS=Gallus gallus GN=BRE PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.061e-11
Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  105 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEETLERQVSEAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 533
            KL  +P ++ +L     + +P +  G C+ +Y+P + + L  +V   +     RR +I A    FG  + E D+  + K    +    F FLV   L   FP+ QP+L  QS  +F + G  + S    +YP+SPRW+ ++MA+R
Sbjct:  218 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLYFPRDQPTLTFQSVYHFTNSGQ-LYSQAQKNYPYSPRWDGNEMAKR 361          
BLAST of DY305169 vs. ExPASy Swiss-Prot
Match: BRE_RAT (BRCA1-A complex subunit BRE OS=Rattus norvegicus GN=Bre PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  105 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEETLERQVSEAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 533
            KL  +P ++ +L     + +P +  G C+ +Y+P +   L  +V   +     RR +I A    FG  + E D+  + K    +    F FLV   L   FP+ QP+L  QS  +F + G  + S    +YP+SPRW+ ++MA+R
Sbjct:  218 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKEFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQ-LYSQAQKNYPYSPRWDGNEMAKR 361          
The following BLAST results are available for this feature:
BLAST of DY305169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BRE_DANRE1.649e-1231.72BRCA1-A complex subunit BRE OS=Danio rerio GN=bre ... [more]
BRE_XENTR8.183e-1230.34BRCA1-A complex subunit BRE OS=Xenopus tropicalis ... [more]
BRE_BRAFL1.396e-1128.67BRCA1-A complex subunit BRE OS=Branchiostoma flori... [more]
BRE_CHICK4.061e-1130.34BRCA1-A complex subunit BRE OS=Gallus gallus GN=BR... [more]
BRE_RAT9.047e-1130.34BRCA1-A complex subunit BRE OS=Rattus norvegicus G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DA03RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305169 ID=DY305169; Name=DY305169; organism=Citrus clementina; type=EST; length=1248bp
GCACGAGGGTGGGGTGCCCCTGGAGACATCCACAGAAAATATCCTTGCAG
GTCATATATCCTGTTAATAGAAAGTATGTTTCTGCTCCTTCAGCACCTCA
TCTTAAATTAATGTCAACACCTGCGTTGAAGTCACTGTTTTCTGTTGATG
ATGTCAAACTTCCTCCATGGTTGGACGGAATGTGTATGGCTGAATACCTT
CCCCATCTAGAAGAAACCCTTGAGAGACAGGTCTCAGAGGCAGTTTCATT
AATCGAAGTTAGAAGACGCTTTATTGAAGCATTAGCTCCTCTATTTGGAA
GACCGATAGAGACTGATTCGGTTTTTTACAGAAAGTCTATGTTTTTTGTT
GCCTCTGGTGCTTTCTCATTCTTGGTGCTATTTTTCCTTTCAACTCAATT
TCCAAAGCAGCAGCCATCTCTCATGCTTCAAAGTTCCATGTATTTCAACT
CTCAAGGCATGCCGATCAAATCACCCCTTCTGACAGATTATCCTTGGAGT
CCAAGATGGGAACATTCACAAATGGCTGAGAGAACATTTGAATTTTTGGT
TGATGAATCTGTAAACTTTAAAAAGTACTGCAACGAAGCCCAACTTCAAC
AGAACCAACACTAGTGCATTGTCATGGCAGAATTAGCCTTTCATTTGTTT
TAGCCCATAGTACCCATTCAAAGTTGTGTAATGTGTGGAACCTGTATTCT
CGAATTCTTTTCCTTGACATTTGTATAAGCTTTTGTCTCGGTGTTGGTAT
AATTTTCATTAGCCTTTGGTGTTGTATTTGTTCATAAAGAAATGAAGCAA
CTCAATTTCGTTTCCAAAGAAGATGATAGCGAAGAAGATAACGCTCTCTT
TGAAGAAAACGGCGTTAATATGGACCTTCAATCGGAAACTCAACCCACCT
CCGGGACCTCGCCGCCGCCGCTCACCTCGGCAACTTTCATTTCCCTCCGT
CCCCCTCTAAATAATTTGAATGGTAATAATTGAGGACCCATAAAAAAAAC
AGGGAAACTGCTCCTCCATCTGAAATGCCCTTTTGGGCTTTCTGGCCTTG
TGGTTCACCTACTTCTTGGAAAAAAGGGGCCTATTTTGGAAAGCCAAAAG
AAGAAAAAAAGGGAAAAAAATCCCCTTCCCCCATGAAAGGCTTTGGGGCG
CGGGGGGGGGTTTTATTTTGAGAAAAAATTTTAAAACTTTTCTTTAAATT
ATAAAAAAAGGGGTGGCAACGCCCGGGCCCCCTGTAAAAAGGGGTGGG
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