FC868512
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29 Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 2 Query: 284 LLQNRMLETK-KAALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 L+ NR L K +AA + + + A A++ + WYG +R +WLGP + P+YLTGE PGDYG+D AGLS DP F+KY E++HARWA+LGALG L PE+L F EPVW++ G LDYLG Sbjct: 5 LISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLG 138
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26 Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 353 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 AR + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ F EPVW++ G LDYLG Sbjct: 38 ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLG 146
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26 Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G F E VW++ G Q LDYLG Sbjct: 45 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGSQIFQEGGLDYLG 146
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26 Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 +S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26 Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 +S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26 Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 +S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLG 147
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26 Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 371 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 +S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 18 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLG 119
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26 Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 2 Query: 287 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 L+ R +K + D +A +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 17 LKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV-QFGEAVWFKAGAQIFSEGGLDYLG 146
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26 Identity = 64/144 (44.44%), Postives = 82/144 (56.94%), Query Frame = 2 Query: 248 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 A KA+ N P L+ + + +K A A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G F E W++ G LDYLG Sbjct: 14 AGKAVKNLPSSALIGDARVNMRKTA--------AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAGWFKAGSQIFSDGGLDYLG 148
BLAST of FC868512 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26 Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 2 Query: 344 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHFVEPVWWRVGYSKLQGETLDYLG 679 KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G F E VW++ G LDYLG Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLG 147 The following BLAST results are available for this feature:
BLAST of FC868512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868512 ID=FC868512; Name=FC868512; organism=Citrus clementina; type=EST; length=727bpback to top |