FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH18_ARATH (DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana GN=RH18 PE=2 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 1.530e-86 Identity = 163/205 (79.51%), Postives = 187/205 (91.22%), Query Frame = 3 Query: 72 SNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +N NKALTETRFSDL+P LS ++EAL ++ FEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR++S KPHQ+MG+IISPTRELS+QIY+VAQPF+STL +V SVLLVGG EVKAD+K IEEEG N+LIGTPGRL DIMERM++LDFRNLEIL+LDEADRLL+MGFQ+Q++YIISRLPK RRTGLFS+ T Sbjct: 5 ANINKALTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQT 209
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH49_ARATH (DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana GN=RH49 PE=2 SV=2) HSP 1 Score: 297.745 bits (761), Expect = 3.650e-80 Identity = 150/209 (71.77%), Postives = 182/209 (87.08%), Query Frame = 3 Query: 66 MESNPNKALTET--RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 M+S+P K +T+ RFS+LKP LSE ++EAL +GFE CTPVQA TIP LCS+KDV VDAATGSGKTLAF++P +EI+RR++S KPHQ+MG+IISPTRELS+QI+ VA+PF+STLP+V SVLLVGG EV+AD+ +EEEGANLLIGTPGRL D+M+RM+ LDFRNLEIL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFS+ T Sbjct: 1 MDSSPPKTITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQT 209
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH18_ORYSJ (DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica GN=Os01g0164500 PE=1 SV=2) HSP 1 Score: 291.582 bits (745), Expect = 2.616e-78 Identity = 144/200 (72.00%), Postives = 176/200 (88.00%), Query Frame = 3 Query: 84 KALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +ALTE RFS+L PALS V++AL GF CTPVQAA IPLL S+KDVAVDAATGSGKTLAFVVP+VEILRR S KPH+++G+IISPTRELSSQIY+VAQPF +TL V S+LLVGG ++KA++KK+EEEGAN+L+GTPG+L+D+MER+D L+++NLEIL+LDEADRLLD+GFQKQI+ IIS+LPKLRRTGLFS+ T Sbjct: 16 RALTEQRFSELSPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVVEILRRRPSPPKPHEVLGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPGKLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGLFSATQT 215
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH55_ARATH (DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana GN=RH55 PE=2 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.218e-67 Identity = 135/210 (64.29%), Postives = 165/210 (78.57%), Query Frame = 3 Query: 66 MESNPNKALTET---RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 M+S+P + E RFS+LKP LSE ++EAL +GFE CTPVQA TIP LCS+KDV VDAATGSGKTLAF++P +EI+RR++S KPHQ+MG+IISPTRELS+QI+ VA+ + EV+AD+ +EEEGANLLIGTPGRL D+M+RM+ LDFRNLEIL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFS+ T Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCR--------EVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQT 202
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX55_CHICK (ATP-dependent RNA helicase DDX55 OS=Gallus gallus GN=DDX55 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47 Identity = 105/205 (51.22%), Postives = 137/205 (66.83%), Query Frame = 3 Query: 84 KALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +A+TE +S L ALS VL AL + GF+ TPVQ+ATIPL S KDVA +A TGSGKTLAFV+P++EIL R K Q+ +II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGRL D+ R D LD ++L++LVLDEADRLLDMGF+ ++ I++ LPK RRTGLFS+ T Sbjct: 2 EAVTEGGWSSLPVALSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSATQT 206
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX55_DANRE (ATP-dependent RNA helicase DDX55 OS=Danio rerio GN=ddx55 PE=2 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 2.235e-45 Identity = 98/203 (48.28%), Postives = 134/203 (66.01%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +T+ ++ L L + +L+ L E GF + TPVQ+A IPL S KDVA +A TGSGKTLAFV+P +EIL + K Q+ +II+PTREL+ QI V F+ P +LL+GG DV+K++ +GAN++I TPGRL D+ R D LD ++L++LVLDEADRLLDMGF+ ++ I+ LPK RRTGLFS+ T Sbjct: 4 ITDGKWGSLPVKLHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRRTGLFSATQT 206
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX55_HUMAN (ATP-dependent RNA helicase DDX55 OS=Homo sapiens GN=DDX55 PE=1 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44 Identity = 99/203 (48.77%), Postives = 131/203 (64.53%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +TE + L L VL AL E GF + TPVQ+ATIPL KDVA +A TGSGKTLAFV+P++EIL R K Q+ +II+PTREL+ QI V F P+ +L +GG DV++ +++G N+++ TPGRL D+ R + LD R+L++LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFS+ T Sbjct: 4 VTEGSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX55_BOVIN (ATP-dependent RNA helicase DDX55 OS=Bos taurus GN=DDX55 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44 Identity = 100/203 (49.26%), Postives = 126/203 (62.07%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +TE + L L VL L E GF + TPVQ+ATIPL KDVA +A TGSGKTLAFV+P+ EIL R K Q+ +II+PTREL+ QI V F P +L +GG DV + +E G N+++ TPGRL D+ R + LD R+LE+LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFS+ T Sbjct: 4 VTEGSWESLPVPLHPKVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIEEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSATQT 206
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX55_MOUSE (ATP-dependent RNA helicase DDX55 OS=Mus musculus GN=Ddx55 PE=2 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 1.602e-43 Identity = 97/203 (47.78%), Postives = 130/203 (64.04%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +TE + L+ L VL AL E GF TPVQ+ATIPL KDVA +A TGSGKTLAFV+P++EIL R K +Q+ ++I+PTREL+ QI V F P +L +GG DV++ ++ G N+++ TPGRL D+ R + LD ++L++LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFS+ T Sbjct: 4 VTEGAWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX55_XENLA (ATP-dependent RNA helicase DDX55 OS=Xenopus laevis GN=ddx55 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.092e-43 Identity = 96/203 (47.29%), Postives = 128/203 (63.05%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +TE + L L+ + L E F TPVQ+ATIPL + KD+A +A TGSGKTLAFV+PL+EIL + K +Q+ +II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGRL D+ R D LD + L++L+LDEADRLLDMGF+ I+ I+ LPK RRTGLFS+ T Sbjct: 4 VTEGTWDSLPQKLNGSIRRTLEELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLKKNQVGALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVDDVRKFKEHGGNIIVATPGRLEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRRTGLFSATQT 206 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |