FC868896

Overview
NameFC868896
Unique NameFC868896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.264e-24
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1
Query:  100 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            K  I KDVTELIG+TP+VYLN VVDGCVAR+AAKLEMM+PCSSVKDRI YSMI DAE+KGLITPG+
Sbjct:    5 KSTIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGE 70          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:   97 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            +K  I KDVTELIG+TP+VYLNNVVDGCVAR+AAKLE M+PCSSVKDRI YSMI DAE+KGLI PG+
Sbjct:    4 EKIGIAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGE 70          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I KDVTELIG+TP+VYLN V DGCV R+AAKLE M+PCSSVKDRI YSMI DAE+KGLITPGK
Sbjct:    5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGK 67          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-22
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   91 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            +E+K  I KDVTELIG TP+VYLN V DGCVAR+AAKLE M+PCSSVKDRI +SMI DAE  GLITPG+
Sbjct:    2 VEEKAFIAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGE 70          

HSP 2 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  543 KTVLIEITSGNTGIGLAFIAASRGYKLIIIMPXTYSIERRIILRA 677
            ++VLIE TSGNTGIGLAFIAA++GYKLII MP + S+ERR ILRA
Sbjct:   70 ESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRA 114          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.635e-22
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI PG+
Sbjct:    5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGE 67          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.442e-22
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI PG+
Sbjct:    5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGE 67          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.495e-22
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I KDVTELIG+TP+VYLN V DGCV R+AAKLE M+PCSSVKDRI YSMI DAE+KG I PGK
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGK 71          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I  DVT LIG+TP+VYLN VVDGC A+IAAKLE+M+PCSSVKDRI YSMI DAE+KGLITPGK
Sbjct:    8 IASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGK 70          

HSP 2 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  543 KTVLIEITSGNTGIGLAFIAASRGYKLIIIMPXTYSIERRIILRA 677
            K+VLIE TSGNTGIGLAF+AA++GYKLI+ MP + S+ERRIIL+A
Sbjct:   70 KSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKA 114          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 294
            I KDVTELIG+TP+VYLN V DGCV R  AKLE M+PCSSVKDRI YSMI DAE+KGLITPG
Sbjct:    8 IAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEEKGLITPG 69          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   91 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            M  +  I  DVTELIG+TP+VYLN+V +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI PG+
Sbjct:    1 MASRIGIANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGE 69          
The following BLAST results are available for this feature:
BLAST of FC868896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CYSK_CITLA1.264e-2481.82Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SOLTU4.803e-2479.10Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK1_ORYSJ4.066e-2380.95Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_SPIOL2.018e-2273.91Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK1_BRAJU2.635e-2277.78Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK1_ARATH3.442e-2277.78Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_WHEAT4.495e-2277.78Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK2_ORYSJ5.871e-2279.37Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_MAIZE2.231e-2179.03Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK2_BRAJU2.231e-2169.57Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31006B12EF AbioticL1 Citrus clementina cDNA clone C31006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868896 ID=FC868896; Name=FC868896; organism=Citrus clementina; type=EST; length=679bp
TATATATATTGTTTCTACAATATTGAAGAGAAAAAGTTACATTACCAGGC
TTGCTGCTTGATTTTTGAAAGTGTCTGATGAAGTAGCTCCATGGAGGACA
AGTGTGAAATTAAGAAAGATGTTACCGAATTGATAGGCCATACACCGATG
GTGTATCTCAATAATGTTGTGGATGGCTGTGTAGCACGTATTGCTGCCAA
GCTAGAAATGATGCAACCTTGCTCTAGTGTCAAAGACAGAATTGCATATA
GTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAGGGAAGGTA
TTCAATGGAAACTCTCCAATTCTAAAGTTGATTAATCATAAAAATTATGC
TATGAACTCAGTGTTTTTGTTTTCAGTCAACGTTAATAACTTCAACCAAG
CCCATCCTGCTTCTTAAAATTTTAAGAGTCTCTTGTGTTTTCCAAGACTT
CTGCTCAAACTGGGTTTACACTGCTCAAACTGATTGATAAACATGTTAAC
TAACAAATTTGCCGTCTGGATATGTTGGAATGTTGATGGTTAAAGACTGT
CCTCATTGAGATAACTAGTGGAAACACCGGTATTGGATTGGCCTTCATTG
CAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATNCACATATAGT
ATTGAGAGAAGAATAATTCTCAGAGCTTT
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