FC872521

Overview
NameFC872521
Unique NameFC872521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length848
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9977 contig Ccv1_Contig9977:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872521 vs. ExPASy Swiss-Prot
Match: GDE1_YEAST (Glycerophosphodiester phosphodiesterase GDE1 OS=Saccharomyces cerevisiae GN=GDE1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 76/261 (29.12%), Postives = 116/261 (44.44%), Query Frame = 3
Query:  249 VMGHRGSGMNMLRSSDQRMKSMKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEG----EIIEKRVTDITLA--EFLSYGPQNDPENV-GKPMLRKTKDGRIFE----------WKVEKDTP-------------------------------------LCTLQEAFEKVDQSVGFNVELKF-------DDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGG 848
            V+GHRG G N    S Q    + ENT+ SF  AA     ++EFDVQ+T+D  PV++HD  +          E+  ++  D+  A  E +  G  + P +V G     +   GR  +          W +  + P                                       TL+E F+K+  +VGFN+E KF       +++L     E+ H ++ +LKVVF++A GR I+FSSF PD  +++   Q   P+ FLT GG
Sbjct:  874 VIGHRGLGKNNPNKSLQ----IGENTVESFIMAASLGASYVEFDVQLTKDNVPVVYHDFLVAETGVDIPMHELTLEQFLDLNNADKEHIQRGAGHSPHHVNGADTALQKYRGRSVDDSDVSTLRRAWDLHDNDPNGKSNNAHWSDNRMRLTKTFKKNNFKGNARGHSIASSFVTLKELFKKIPANVGFNIECKFPMLDEAEEEELGQIMMEMNHWVDTVLKVVFDNANGRDIIFSSFHPDICIMLSLKQPVIPILFLTEGG 1130          
BLAST of FC872521 vs. ExPASy Swiss-Prot
Match: GDE1_ASHGO (Glycerophosphodiester phosphodiesterase GDE1 OS=Ashbya gossypii GN=GDE1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 69/255 (27.06%), Postives = 121/255 (47.45%), Query Frame = 3
Query:  249 VMGHRGSGMNMLRSSDQRMKSMKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVT----------------------------------DITLAEFL--SYGPQNDPENVGKPM-------LRKTKDGRIFEWKVEKD-----TPLCTLQEAFEKVDQSVGFNVELKF-------DDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGG 848
            V+GHRG G NM   +  +   + ENT+ SF AAA     ++EFDVQ+T+D  P + + +F+  +   +I    +T                                  D + AE +  S   + D +   + +       +R T+  +   +K         +   TL+E F+K+ Q+VGFN+E K+       ++ +     E+ H ++ +L+VV+++ +GR ++FSSFQPD  L++   Q ++P+ FLT GG
Sbjct:  974 VIGHRGLGKNM---NTNKSLQLGENTVESFIAAASLGASYVEFDVQLTKDNIP-VVYHDFLVAESGVDIPMHELTLEQFLDLNGERQRHQDAREAHRNHRSPNGRRLSMDDSSAELIKRSLMMRGDEDRTARDLNTIYGDRMRLTRTFKKNAFKANSRGHAIASSFVTLKELFKKIPQNVGFNIECKYPMVDEAEEEDIGPIAVEMNHWIDTVLEVVYDNVEGRDVIFSSFQPDVCLMLSLKQPSFPILFLTEGG 1224          
BLAST of FC872521 vs. ExPASy Swiss-Prot
Match: GDE5_MOUSE (Putative glycerophosphodiester phosphodiesterase 5 OS=Mus musculus GN=Gde5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 65/217 (29.95%), Postives = 111/217 (51.15%), Query Frame = 3
Query:  252 MGHRGSGMNMLRSSDQRMKSMKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI-------FTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVE----KDTPLCTLQEAFEKVDQSVGFNVELKFD--------DQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNG 845
            +GHRG+G +   ++  ++  ++ENTI S   AA H   F+EFDV +++D  PV++HD          +  D  E+ E  V ++T  +            +      KTKD +   ++ E    ++ P  +L+   E + ++VGFN+E+K+         D  + T  ++   L+ ILK V E++  R I+FSSF  D   ++R+ Q+ YP+ FLT G
Sbjct:  324 VGHRGAGNS---TTTAKLAKVQENTIASLRNAASHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKRKYEADPVELFEIPVKELTFDQLQLL-------KLSHVTALKTKDRKQSLYEEENFFSENQPFPSLKMVLESLPENVGFNIEIKWICQHRDGVWDGNLSTYFDMNVFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQG 530          
BLAST of FC872521 vs. ExPASy Swiss-Prot
Match: GDE5_RAT (Putative glycerophosphodiester phosphodiesterase 5 OS=Rattus norvegicus GN=Gde5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 65/217 (29.95%), Postives = 109/217 (50.23%), Query Frame = 3
Query:  252 MGHRGSGMNMLRSSDQRMKSMKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI-------FTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIF----EWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFD--------DQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNG 845
            +GHRG+G +   ++  ++  ++ENTI S   AA H   F+EFDV +++D  PV++HD          +  D  E+ E  V ++T  +            +      KTKD +      E    ++ P  +L+   E + ++VGFN+E+K+         D  + T  ++   L+ ILK V E++  R I+FSSF  D   ++R+ Q+ YP+ FLT G
Sbjct:  321 VGHRGAGNS---TTTAKLAKVQENTIASLRNAASHGAAFVEFDVHLSKDLVPVVYHDLTCCLTMKRKYEADPVELFEIPVKELTFDQLQLL-------KLSHVTALKTKDQKQCMAEEENSFSENQPFPSLKMVLESLPENVGFNIEIKWICQHRDGVWDGNLSTYFDMNAFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQG 527          
BLAST of FC872521 vs. ExPASy Swiss-Prot
Match: GDE5_HUMAN (Putative glycerophosphodiester phosphodiesterase 5 OS=Homo sapiens GN=GDE5 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 73/253 (28.85%), Postives = 124/253 (49.01%), Query Frame = 3
Query:  147 GNVTLNYLHSPRVCKGVNEDGVETKSGYKFPKFVV-MGHRGSGMNMLRSSDQRMKSMKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI-------FTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIF----EWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFD--------DQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNG 845
            G V ++Y+   +   G + D   + S Y  P+  + +GHRG+G +   ++  ++  ++ENTI S   AA H   F+EFDV +++D  PV++HD          F  D  E+ E  V ++T  +            +      K+KD +      E    ++ P  +L+   E + + VGFN+E+K+         D  + T  ++   L+ ILK V E++  R I+FSSF  D   ++R+ Q+ YP+ FLT G
Sbjct:  286 GKVRVDYIII-KPLPGYSCDMKSSFSKYWKPRIPLDVGHRGAGNS---TTTAQLAKVQENTIASLRNAASHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKELTFDQLQLL-------KLTHVTALKSKDRKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNLFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQG 527          
The following BLAST results are available for this feature:
BLAST of FC872521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GDE1_YEAST2.740e-2029.12Glycerophosphodiester phosphodiesterase GDE1 OS=Sa... [more]
GDE1_ASHGO5.167e-1927.06Glycerophosphodiester phosphodiesterase GDE1 OS=As... [more]
GDE5_MOUSE6.748e-1929.95Putative glycerophosphodiester phosphodiesterase 5... [more]
GDE5_RAT1.503e-1829.95Putative glycerophosphodiester phosphodiesterase 5... [more]
GDE5_HUMAN4.374e-1828.85Putative glycerophosphodiester phosphodiesterase 5... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AH08ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872521 ID=FC872521; Name=FC872521; organism=Citrus clementina; type=EST; length=848bp
GGGGAAGCTCCAAATTCACGTCGCGTATTTTCTTATATTTCCCTTATCCT
TTTCTTGAGTTCTTGCAAAAGCCAAAAATTAGAATAAAAGAAATGGCTCT
CAAAGCCGTTCATGTCTCTGACGTTCCCAATCTTGATCAAGTTCCCGGAA
ATGTTACATTGAATTATCTCCACTCACCCCGCGTCTGCAAAGGGGTTAAT
GAGGATGGTGTTGAGACAAAGAGTGGATATAAGTTTCCAAAATTTGTGGT
GATGGGCCACAGAGGGAGTGGGATGAACATGTTACGGTCGTCCGATCAAA
GAATGAAATCAATGAAAGAAAATACAATTCTCTCTTTCAATGCAGCCGCT
CGTCACCCTCTCGACTTCATTGAATTCGACGTTCAGGTGACGAGAGATGG
CTGTCCGGTTATTTTCCATGATAATTTCATCTTCACCAAGGACGAGGGTG
AAATAATTGAGAAAAGGGTTACGGACATTACTTTAGCTGAATTTCTTTCC
TATGGACCGCAGAACGACCCTGAAAATGTGGGGAAGCCTATGCTTAGAAA
AACAAAAGATGGGAGAATATTTGAGTGGAAGGTTGAAAAGGACACTCCTC
TATGTACATTGCAAGAGGCTTTTGAGAAAGTTGATCAATCCGTGGGTTTT
AATGTTGAATTAAAGTTTGATGATCAATTAGTTTACACGGAGGAAGAACT
CACGCATGCCCTTGAAGCTATCTTGAAGGTGGTGTTTGAACATGCCCAGG
GCAGACCGATCATGTTCTCTAGCTTTCAACCTGATGCAGCGCTGTTGATT
AGGAAACTCCAGAGCACCTACCCTGTGTTCTTCTTAACAAATGGAGGT
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