FC872530

Overview
NameFC872530
Unique NameFC872530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9979 contig Ccv1_Contig9979:1..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872530 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 483.026 bits (1242), Expect = 8.756e-136
Identity = 228/282 (80.85%), Postives = 252/282 (89.36%), Query Frame = 3
Query:    3 GLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSVSTNNIQSRMVVPVSKCS-SPRKPSMKFLIYGRTGWIXXXXXXXXXXXXIPFEYGKGRLEDRSSLIADVQSVKPTHGFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCREHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWN 845
            GL+KT++WYTQNP+WWGDVSGALLPHPRMLMMPGGRHFDGSE+N   +++S    Q+ MVVP  + + +P+KPS+KFLIYG+TGWI            I +EYGKGRLEDRSSL+ D+QSVKPTH FN+AGVTGRPNVDWCESHKT+TIR NVAGTLTLADVCREHG+LMMN+ATGCIFEYD  HPEGSGIG+KEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNL+GIWN
Sbjct:  311 GLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRHFDGSEDNSLAATLSEKPSQTHMVVPSQRSNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWN 592          
BLAST of FC872530 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 457.218 bits (1175), Expect = 5.145e-128
Identity = 218/281 (77.58%), Postives = 242/281 (86.12%), Query Frame = 3
Query:    3 GLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSVSTNNIQSRMVVPVSKCSSPRKPSMKFLIYGRTGWIXXXXXXXXXXXXIPFEYGKGRLEDRSSLIADVQSVKPTHGFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCREHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWN 845
            GLRKT+EWYT+NP+WWGDVSGALLPHPRMLMMPG RH DGS+E+K      T  +    V P     S  K S+KFLIYG+TGW+            IP+EYGKGRLEDR+SLIAD++S+KP+H FNAAG+TGRPNVDWCESHKT+TIR NVAGTLTLADVCRE+ +LMMN+ATGCIFEYDAAHPEGSGIG+KEED PNFTGSFYSKTKAMVEELL+E+DNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMT+LDELLPISIEMAKRNLRGIWN
Sbjct:  311 GLRKTMEWYTENPEWWGDVSGALLPHPRMLMMPGDRHSDGSDEHKNADGNQTFTV----VTPTKAGCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWN 587          
BLAST of FC872530 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 450.669 bits (1158), Expect = 4.816e-126
Identity = 217/281 (77.22%), Postives = 241/281 (85.77%), Query Frame = 3
Query:    3 GLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSVSTNNIQSRMVVPVSKCSSPRKPSMKFLIYGRTGWIXXXXXXXXXXXXIPFEYGKGRLEDRSSLIADVQSVKPTHGFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCREHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWN 845
            GL+KT++WYTQNP+WWGDVSGALLPHPRMLMMPGGR  DGS E K VSS   N +Q+  VV      S  K S+KFLIYG+TGW+            I +EYGKGRLEDR+SL+AD++S+KPTH FNAAG+TGRPNVDWCESHK +TIR NVAGTLTLADVCRE+ +LMMN+ATGCIFEYDA HPEGSGIG+KEED PNF GSFYSKTKAMVEELL+E+DNVCTLRVRMPISSDLNNPRNFITKISRYNKVV+IPNSMTVLDELLPISIEMAKRNLRGIWN
Sbjct:  313 GLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRLSDGSSEKKDVSS---NTVQTFTVVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWN 590          
BLAST of FC872530 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.467e-30
Identity = 75/214 (35.05%), Postives = 117/214 (54.67%), Query Frame = 3
Query:  222 MKFLIYGRTGWIXXXXXXXXXXXXIPFEYGKGRLEDRSSLIADVQSVKPTHGFNAAGVTGRPN---VDWCESHK--TDTIRTNVAGTLTLADVCREHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDN-VCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWN 845
            MK+LI+G  GWI                  + R +D S++  ++  +KP    +  G T  P    +D+ E      + ++ N+ G L LA +C+++ I +    TGCIFE    +      G+ E D PNF GS YS  K   + L+  +DN V  LR+RMPI+ +  NPR+FITKI  Y+++ +IPNSMT+LD+++P+ I+MA+    G +N
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFE-GQNNFSADEKGFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFN 212          
The following BLAST results are available for this feature:
BLAST of FC872530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM1_ARATH8.756e-13680.85Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH5.145e-12877.58Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH4.816e-12677.22Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
YL780_MIMIV6.467e-3035.05Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1CA06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872530 ID=FC872530; Name=FC872530; organism=Citrus clementina; type=EST; length=846bp
GGGGGTTGAGGAAGACTATTGAGTGGTACACTCAGAACCCTGATTGGTGG
GGTGATGTCTCTGGTGCTCTGCTTCCTCATCCAAGAATGCTGATGATGCC
TGGTGGGAGACATTTTGATGGGTCTGAAGAGAACAAAGCGGTGTCCAGTG
TCTCAACAAATAACATTCAGTCCCGTATGGTGGTTCCAGTTTCCAAATGC
AGCTCTCCTCGAAAACCATCCATGAAGTTTTTGATCTATGGCAGGACAGG
ATGGATTGGAGGTCTACTAGGAAAGTTGTGTGAGAAAGAGGGTATTCCAT
TTGAATATGGAAAAGGACGTTTGGAGGATCGTTCATCTCTCATTGCAGAT
GTTCAGAGTGTTAAACCCACACATGGTTTCAATGCTGCTGGTGTTACTGG
CAGACCCAATGTTGATTGGTGTGAATCTCATAAAACTGACACCATTCGCA
CCAATGTTGCTGGAACCTTAACCTTGGCAGATGTTTGCAGAGAACATGGG
ATCTTGATGATGAATTATGCTACCGGTTGCATATTTGAGTATGATGCTGC
TCATCCTGAGGGCTCTGGCATTGGGTATAAAGAGGAAGATACACCCAATT
TTACTGGTTCTTTCTACTCAAAAACCAAGGCCATGGTTGAAGAGCTGTTG
AAAGAATACGACAATGTTTGCACTCTCAGAGTCCGAATGCCAATATCTTC
TGACCTAAACAACCCCCGCAACTTCATTACCAAGATTTCTCGTTATAACA
AGGTGGTCAACATTCCAAACAGTATGACTGTTTTGGATGAACTTCTCCCC
ATTTCAATTGAGATGGCAAAGCGTAACTTGAGGGGTATTTGGAACT
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