FC872968
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP1B1_RAT (AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.169e-29 Identity = 81/206 (39.32%), Postives = 110/206 (53.40%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEV---LKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNP 780 +GL+IS TRQ G + + N + F IQFN+N+FGLA LQV L P + LP+ ++ P + LQVAVKNN V+YF+ LHVLF EDG+M+R FL TW+ +P+ NE ++D P N EA L +SN+F +AKR QD+ Y S K+ G+ L EL GNP ++K P Sbjct: 733 KGLEISGTFTRQVGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHAPLSPNQTVEISLPLNTVGSVMKMEPLNNLQVAVKNNID-VFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIPNENEAQFQIRDCP----LNTEAASSKLQSSNIFTVAKRTVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSFTLSLKCRAP 933
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP1B1_HUMAN (AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.076e-28 Identity = 78/195 (40.00%), Postives = 106/195 (54.36%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEV---LKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNP 747 +GL+IS TRQ G + + N + F IQFN+N+FGLA LQV L P + LP+ ++ P + LQVAVKNN V+YF+ LH+LF EDG+M+R FL TW+ +P+ NE ++D P N EA L +SN+F +AKR QD+ Y S K+ G+ L EL GNP Sbjct: 730 KGLEISGTFTRQVGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHAPLSPNQTVEISLPLSTVGSVMKMEPLNNLQVAVKNNID-VFYFSTLYPLHILFVEDGKMDRQMFLATWKDIPNENEAQFQIRDCP----LNAEAASSKLQSSNIFTVAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNP 919
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP1B1_MOUSE (AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.406e-28 Identity = 80/206 (38.83%), Postives = 110/206 (53.40%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVP-QLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEV---LKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNP 780 +GL+IS TRQ G + + N + F IQFN+N+FGLA LQV L P + LP+ ++ P + LQVAVKNN V+YF+ LHVLF EDG+M+R FL TW+ + + NE ++D P N EA + L +SN+F +AKR QD+ Y S K+ G+ L EL GNP ++K P Sbjct: 727 KGLEISGTFTRQAGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHVPLSPNQTVEISLPLNTVGSVLKMEPLNNLQVAVKNNID-VFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIANENEAQFQIRDCP----LNTEAASNKLQSSNIFTVAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSFTLSLKCRAP 927
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP2B1_RAT (AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.828e-26 Identity = 75/203 (36.95%), Postives = 106/203 (52.22%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNP 780 +GL+IS T + G ++ M F N + F IQFNKN+FG+ L + L P S LP+ + P + LQVAVKNN V+YF+ I L+VLF EDG+MER FL TW+ +P+ NE+ + + N + L +N++ IAKR QD+ Y S K+ G+ L EL GNP ++K P Sbjct: 721 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAP 921
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP2B1_MOUSE (AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.828e-26 Identity = 75/203 (36.95%), Postives = 106/203 (52.22%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNP 780 +GL+IS T + G ++ M F N + F IQFNKN+FG+ L + L P S LP+ + P + LQVAVKNN V+YF+ I L+VLF EDG+MER FL TW+ +P+ NE+ + + N + L +N++ IAKR QD+ Y S K+ G+ L EL GNP ++K P Sbjct: 721 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAP 921
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP2B1_HUMAN (AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.828e-26 Identity = 75/203 (36.95%), Postives = 106/203 (52.22%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNP 780 +GL+IS T + G ++ M F N + F IQFNKN+FG+ L + L P S LP+ + P + LQVAVKNN V+YF+ I L+VLF EDG+MER FL TW+ +P+ NE+ + + N + L +N++ IAKR QD+ Y S K+ G+ L EL GNP ++K P Sbjct: 721 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAP 921
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP2B1_BOVIN (AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 3.828e-26 Identity = 75/203 (36.95%), Postives = 106/203 (52.22%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNP 780 +GL+IS T + G ++ M F N + F IQFNKN+FG+ L + L P S LP+ + P + LQVAVKNN V+YF+ I L+VLF EDG+MER FL TW+ +P+ NE+ + + N + L +N++ IAKR QD+ Y S K+ G+ L EL GNP ++K P Sbjct: 721 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAP 921
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP1B1_BOVIN (AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.828e-26 Identity = 75/203 (36.95%), Postives = 106/203 (52.22%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNP 780 +GL+IS T + G ++ M F N + F IQFNKN+FG+ L + L P S LP+ + P + LQVAVKNN V+YF+ I L+VLF EDG+MER FL TW+ +P+ NE+ + + N + L +N++ IAKR QD+ Y S K+ G+ L EL GNP ++K P Sbjct: 735 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAP 935
BLAST of FC872968 vs. ExPASy Swiss-Prot
Match: AP1B_DICDI (AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18 Identity = 66/208 (31.73%), Postives = 107/208 (51.44%), Query Frame = 1 Query: 175 QGLQISAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLA-AGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKN-NQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSN----EVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNP 780 Q +QIS TR G++ + N +Q + F IQF +N+FG++ A L ++ G S +P+ +S P + ++ +A+ Q +YF L L TE GR++R S+L W+S+P+SN E+ LP V +V++ L L + N+F I ++K NQ++ + S K V LIEL I +C+ KT +P Sbjct: 721 QAIQISGAFTRFQGRINLELNLLNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQIS-NPLNPVIDMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHV---DVDSILRRLNSKNIFEIVRKKAPNQEISFLSCKTESSVYILIELAFNISTNTCRCSSKTTSP 924 The following BLAST results are available for this feature:
BLAST of FC872968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872968 ID=FC872968; Name=FC872968; organism=Citrus clementina; type=EST; length=781bpback to top |