FC873231

Overview
NameFC873231
Unique NameFC873231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14202 contig Ccv1_Contig14202:121..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.370e-71
Identity = 126/152 (82.89%), Postives = 132/152 (86.84%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            DM TD + TV LPDVMKASIRPDIV FVHSNIS+NS QPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMF PTKIWRRWHRKINVNQKRY           PSLV+ARGHKIETVPE+PLVVSDS E VE+T
Sbjct:   20 DMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEET 171          

HSP 2 Score: 31.5722 bits (70), Expect = 1.370e-71
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  450 ENHQLPLKVLKQIGAYADAEK 512
            E     LKVLKQIGAY+DAEK
Sbjct:  169 EETSAALKVLKQIGAYSDAEK 189          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 5.147e-68
Identity = 120/152 (78.95%), Postives = 128/152 (84.21%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            DM TD SSTV LPDVM A +RPDIV FVH+ IS NS QPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMF PTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKT
Sbjct:   18 DMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKT 169          

HSP 2 Score: 30.4166 bits (67), Expect = 5.147e-68
Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 3
Query:  441 ECGENHQLPLKVLKQIGAYADAEK 512
            E  E     +KVLKQIGAY DAEK
Sbjct:  164 EAVEKTSAAIKVLKQIGAYDDAEK 187          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 8.753e-68
Identity = 119/152 (78.29%), Postives = 128/152 (84.21%), Query Frame = 1
Query:    1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            DM TD S+TV LPDVM A +RPDIV FVH+ IS NS QPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMF PTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKT
Sbjct:   19 DMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKT 170          

HSP 2 Score: 30.4166 bits (67), Expect = 8.753e-68
Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 3
Query:  441 ECGENHQLPLKVLKQIGAYADAEK 512
            E  E     +KVLKQIGAY DAEK
Sbjct:  165 EAVEKTSAAIKVLKQIGAYDDAEK 188          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.097e-54
Identity = 96/147 (65.31%), Postives = 115/147 (78.23%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V +P V KA IRPDIV FVH+N+ +N+ QPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT
Sbjct:   17 SGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKT 163          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V LP V KA IRPDIV FVH+N+ +N+ QPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT
Sbjct:   18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V LP V KA IRPDIV FVH+N+ +N+ QPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT
Sbjct:   18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V LP V KA IRPDIV FVH+N+ +N+ QPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT
Sbjct:   18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V LP V KA IRPDIV FVH+N+ +N+ QPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT
Sbjct:   18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V LP V KA IRPDIV FVH+N+ +N+ QPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT
Sbjct:   18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164          
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 2.445e-54
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456
            +   V LP V KA IRPDIV FVH+N+ +N+ QPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N  QKRY           P+LVM++GH +E VPE+PLVV D  ES +KT
Sbjct:   18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKT 164          
The following BLAST results are available for this feature:
BLAST of FC873231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL4_PRUAR1.370e-7182.8960S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH5.147e-6878.9560S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH8.753e-6878.2960S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4B_XENLA1.097e-5465.3160S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4_PONAB1.433e-5466.6760S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_MOUSE1.433e-5466.6760S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4_HUMAN1.433e-5466.6760S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_CANFA1.433e-5466.6760S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4_BOVIN1.433e-5466.6760S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]
RL4_RAT2.445e-5466.6760S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873231 ID=FC873231; Name=FC873231; organism=Citrus clementina; type=EST; length=512bp
GACATGGTGACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAA
GGCCTCTATCCGACCCGACATCGTGGGATTTGTCCACTCTAACATCTCCC
AGAACAGTCCCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACC
TCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGT
CCCCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGT
GTCGCGGTGGTCGCATGTTCACTCCCACAAAGATCTGGCGCCGATGGCAC
CGTAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGC
CGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGA
CTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAG
AAAACCATCAGCTGCCCTTAAAAGTCCTGAAGCAGATCGGTGCCTATGCT
GACGCCGAAAAG
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