FC873231
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 1.370e-71 Identity = 126/152 (82.89%), Postives = 132/152 (86.84%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 DM TD + TV LPDVMKASIRPDIV FVHSNIS+NS QPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMF PTKIWRRWHRKINVNQKRY PSLV+ARGHKIETVPE+PLVVSDS E VE+T Sbjct: 20 DMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEET 171 HSP 2 Score: 31.5722 bits (70), Expect = 1.370e-71 Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 450 ENHQLPLKVLKQIGAYADAEK 512 E LKVLKQIGAY+DAEK Sbjct: 169 EETSAALKVLKQIGAYSDAEK 189
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 5.147e-68 Identity = 120/152 (78.95%), Postives = 128/152 (84.21%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 DM TD SSTV LPDVM A +RPDIV FVH+ IS NS QPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMF PTKIWRRWHR++NVN KR+ P+LVMARGHKIE VPEMPLVVSDSAE+VEKT Sbjct: 18 DMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKT 169 HSP 2 Score: 30.4166 bits (67), Expect = 5.147e-68 Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 3 Query: 441 ECGENHQLPLKVLKQIGAYADAEK 512 E E +KVLKQIGAY DAEK Sbjct: 164 EAVEKTSAAIKVLKQIGAYDDAEK 187
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 248.44 bits (633), Expect = 8.753e-68 Identity = 119/152 (78.29%), Postives = 128/152 (84.21%), Query Frame = 1 Query: 1 DMVTDASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 DM TD S+TV LPDVM A +RPDIV FVH+ IS NS QPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMF PTKIWRRWHR++NVN KR+ P+LVMARGHKIE VPEMPLVVSDSAE+VEKT Sbjct: 19 DMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKT 170 HSP 2 Score: 30.4166 bits (67), Expect = 8.753e-68 Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 3 Query: 441 ECGENHQLPLKVLKQIGAYADAEK 512 E E +KVLKQIGAY DAEK Sbjct: 165 EAVEKTSAAIKVLKQIGAYDDAEK 188
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 1.097e-54 Identity = 96/147 (65.31%), Postives = 115/147 (78.23%), Query Frame = 1 Query: 16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + V +P V KA IRPDIV FVH+N+ +N+ QPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N QKRY P+L+M++GH+IE +PE+PLVV D ES +KT Sbjct: 17 SGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKT 163
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54 Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1 Query: 16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + V LP V KA IRPDIV FVH+N+ +N+ QPYAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N QKRY P+LVM++GH+IE VPE+PLVV D E +KT Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54 Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1 Query: 16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + V LP V KA IRPDIV FVH+N+ +N+ QPYAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N QKRY P+LVM++GH+IE VPE+PLVV D E +KT Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5) HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54 Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1 Query: 16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + V LP V KA IRPDIV FVH+N+ +N+ QPYAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N QKRY P+LVM++GH+IE VPE+PLVV D E +KT Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2) HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54 Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1 Query: 16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + V LP V KA IRPDIV FVH+N+ +N+ QPYAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N QKRY P+LVM++GH+IE VPE+PLVV D E +KT Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3) HSP 1 Score: 211.846 bits (538), Expect = 1.433e-54 Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1 Query: 16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + V LP V KA IRPDIV FVH+N+ +N+ QPYAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N QKRY P+LVM++GH+IE VPE+PLVV D E +KT Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKT 164
BLAST of FC873231 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 211.075 bits (536), Expect = 2.445e-54 Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1 Query: 16 ASSTVPLPDVMKASIRPDIVGFVHSNISQNSPQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFTPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKT 456 + V LP V KA IRPDIV FVH+N+ +N+ QPYAVS AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMF PTK WRRWHR++N QKRY P+LVM++GH +E VPE+PLVV D ES +KT Sbjct: 18 SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKT 164 The following BLAST results are available for this feature:
BLAST of FC873231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873231 ID=FC873231; Name=FC873231; organism=Citrus clementina; type=EST; length=512bpback to top |