FC875272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19 Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 2 Query: 236 SIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 S ++ A + N + F+CNICLD A D V++LCGHL+CWPC+++WL + CPVCKA IS ++PLYGRG T + +P K PPRP Sbjct: 24 SSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR------PNRQVCPVCKAGISRDKVIPLYGRGST-GQQDPREKT-------PPRP 112
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18 Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 236 SIASAATGSENYNG-------CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 S A +GS N G F+CNICLD A D V++LCGHL+CWPC+++WL + CPVCKA IS ++PLYGRG T + +P K PPRP Sbjct: 15 SSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR------PNRQVCPVCKAGISRDKVIPLYGRGST-GQQDPREKT-------PPRP 110
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18 Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 236 SIASAATGSENYNG-------CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 S A +GS N G F+CNICLD A D V++LCGHL+CWPC+++WL + CPVCKA IS ++PLYGRG T + +P K PPRP Sbjct: 15 SNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR------PNRQVCPVCKAGISRDKVIPLYGRGST-GQQDPREKT-------PPRP 110
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18 Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 236 SIASAATGSENYNG-------CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 S A +GS N G F+CNICLD A D V++LCGHL+CWPC+++WL + CPVCKA IS ++PLYGRG T + +P K PPRP Sbjct: 15 SSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR------PNRQVCPVCKAGISRDKVIPLYGRGST-GQQDPREKT-------PPRP 110
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18 Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 236 SIASAATGSENYNG-------CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 S A +GS N G F+CNICLD A D V++LCGHL+CWPC+++WL + CPVCKA IS ++PLYGRG T + +P K PPRP Sbjct: 15 SSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR------PNRQVCPVCKAGISRDKVIPLYGRGST-GQQDPREKT-------PPRP 110
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18 Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 2 Query: 281 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP----PAFGNQALLYPTSNTG 592 F+CNICL+ A + VV++CGHLYCWPC+++WL + E +CPVCKA IS +VPLYGRG + +P K PPRP PA ++ P +TG Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETR------PERQECPVCKAGISREKVVPLYGRGSQKPQ-DPRLKT-------PPRPQGQRPAPESRGGFQPFGDTG 118
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18 Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 2 Query: 242 ASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 A + G + F+CNICLD + D V++LCGHL+CWPC+++WL + CPVCKA IS ++PLYGRG T + +P K PPRP Sbjct: 26 AGESGGGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETR------PNRQVCPVCKAGISRDKVIPLYGRGST-GQQDPREKT-------PPRP 112
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2 Query: 281 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 F+CNICL+ A + VV++CGHLYCWPC+++WL + + +CPVCKA IS +VPLYGRG + +P K PPRP Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETR------PDRQECPVCKAGISREKVVPLYGRGSQKPQ-DPRLKT-------PPRP 98
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2 Query: 281 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 F+CNICL+ A + VV++CGHLYCWPC+++WL + + +CPVCKA IS +VPLYGRG + +P K PPRP Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETR------PDRQECPVCKAGISREKVVPLYGRGSQKPQ-DPRLKT-------PPRP 98
BLAST of FC875272 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17 Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 2 Query: 221 AREWKSIASAATGSENYNGC--FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 544 A E K+ + T S N + F+CNICLD A D VV+LCGHL+CWPC+ +WL + + CPVCK+ I +VP+YGRG S+P KV PPRP Sbjct: 2 ASETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTR------PNNQVCPVCKSAIDGNKVVPIYGRG--GDSSDPRKKV-------PPRP 96 The following BLAST results are available for this feature:
BLAST of FC875272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875272 ID=FC875272; Name=FC875272; organism=Citrus clementina; type=EST; length=732bpback to top |