FC875369

Overview
NameFC875369
Unique NameFC875369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875369_ssr74 microsatellite FC875369_ssr74:74..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:3..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 2.872e-95
Identity = 168/194 (86.60%), Postives = 175/194 (90.21%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPL+TVQSLEGDMATD + TV LPDVMKASIRPDIV FVHSNISKNSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY           PSLV+ARGHKIETVPE+PLVVSDS E VE+TSAALKVLKQIGAY+DAEKAKDS  IRPGKGK
Sbjct:    9 RPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPGKGK 202

HSP 2 Score: 30.0314 bits (66), Expect = 2.872e-95
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1 
Query:  652 PWKG*MRNRRYISRKG 699
            P KG MRNRRYI+RKG
Sbjct:  198 PGKGKMRNRRYINRKG 213
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 2.030e-90
Identity = 156/194 (80.41%), Postives = 171/194 (88.14%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPL+T+Q+L+GDM+TD SSTV LPDVM A +RPDIV FVH+ IS NSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGK
Sbjct:    7 RPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGK 200

HSP 2 Score: 31.9574 bits (71), Expect = 2.030e-90
Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  643 GDSPWKG*MRNRRYISRKG 699
            G  P KG MRNRRYISRKG
Sbjct:  193 GIRPGKGKMRNRRYISRKG 211
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 3.454e-90
Identity = 156/194 (80.41%), Postives = 170/194 (87.63%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPL+TVQ L+GDM+TD S+TV LPDVM A +RPDIV FVH+ IS NSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGK
Sbjct:    8 RPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGK 201

HSP 2 Score: 31.9574 bits (71), Expect = 3.454e-90
Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  643 GDSPWKG*MRNRRYISRKG 699
            G  P KG MRNRRYISRKG
Sbjct:  194 GIRPGKGKMRNRRYISRKG 212
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 9.923e-66
Identity = 121/194 (62.37%), Postives = 146/194 (75.26%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+++LK++ A+ D +K   SQ +R GKGK
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGK 195

HSP 2 Score: 23.0978 bits (48), Expect = 9.923e-66
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  193 KGKMRNRRRIQRRG 206
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 1.687e-65
Identity = 121/194 (62.37%), Postives = 146/194 (75.26%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH +E VPE+PLVV D  ES +KT  A+++LK++ A+ D +K   SQ +R GKGK
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGK 195

HSP 2 Score: 23.0978 bits (48), Expect = 1.687e-65
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  193 KGKMRNRRRIQRRG 206
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.047e-65
Identity = 121/194 (62.37%), Postives = 146/194 (75.26%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLITV S   D    + S V LP V +A IRPDIV FVH  + KN RQPYAVS+KAGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG RMFAPTK WRRWHR++N  Q+R+           P++VM++GH IE +PE+PLVVSDS ES++KT  A+ VL+++ A+ D EK K+S+  R GKGK
Sbjct:    4 RPLITVHS---DKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGK 194
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 247.669 bits (631), Expect = 2.200e-65
Identity = 121/194 (62.37%), Postives = 145/194 (74.74%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGK
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 195

HSP 2 Score: 23.0978 bits (48), Expect = 2.200e-65
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  193 KGKMRNRRRIQRRG 206
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 2.200e-65
Identity = 121/194 (62.37%), Postives = 145/194 (74.74%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGK
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 195

HSP 2 Score: 23.0978 bits (48), Expect = 2.200e-65
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  193 KGKMRNRRRIQRRG 206
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 2.200e-65
Identity = 121/194 (62.37%), Postives = 145/194 (74.74%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGK
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 195

HSP 2 Score: 23.0978 bits (48), Expect = 2.200e-65
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  193 KGKMRNRRRIQRRG 206
[Close]
BLAST of FC875369 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.201e-65
Identity = 119/194 (61.34%), Postives = 147/194 (75.77%), Query Frame = 2 
Query:   86 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGK 667
            RPLI+V S +G+ +      V +P V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ +R GKGK
Sbjct:    4 RPLISVYSEKGETS---GKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGK 194

HSP 2 Score: 23.0978 bits (48), Expect = 2.201e-65
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 
Query:  658 KG*MRNRRYISRKG 699
            KG MRNRR I R+G
Sbjct:  192 KGKMRNRRRIQRRG 205
The following BLAST results are available for this feature:
BLAST of FC875369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RL4_PRUAR2.872e-9586.6060S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH2.030e-9080.4160S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH3.454e-9080.4160S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_MOUSE9.923e-6662.3760S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4_RAT1.687e-6562.3760S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_URECA2.047e-6562.3760S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4_HUMAN2.200e-6562.3760S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_CANFA2.200e-6562.3760S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4_BOVIN2.200e-6562.3760S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]
RL4B_XENLA2.201e-6561.3460S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]

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Properties
Property NameValue
Genbank descriptionC31403B10EF CTVClemen1 Citrus clementina cDNA clone C31403B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875369 ID=FC875369; Name=FC875369; organism=Citrus clementina; type=EST; length=700bp
GGTCAATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCC
CAAAAAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACC
GTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCC
TTTGCCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTG
TCCACTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGG
AAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGT
CTCCCGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGGCCAGG
GAGCCTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAG
ATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGC
CATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCC
GCGGTCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGAT
TCCGCCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCA
GATCGGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTC
GCCCTGGAAAGGGTAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCC
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