FC875456

Overview
NameFC875456
Unique NameFC875456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875456_ssr14 microsatellite FC875456_ssr14:14..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9910 contig Ccv1_Contig9910:21..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.241e-90
Identity = 164/212 (77.36%), Postives = 178/212 (83.96%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKFFVGGNWKCNGT EEVKKI++ LN                   FL LVK+ LRP FHVAAQNCWVKKGGAFTGE+SAEMLVNL IP VILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLE+RE+GSTM+VVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL AN SPE+AA+TRIIYGGS
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 5.520e-89
Identity = 164/212 (77.36%), Postives = 179/212 (84.43%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            M RKFFVGGNWKCNGT EEVKKIV+ LNE Q                FL LVKS+LR  F VAAQNCWVKKGGAFTGE+SAEMLVNL+IP VILGHSERR ILNE +EFVGDKVAYAL+QGLKVIACVGETLE+REAGSTM+VVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  N S ++AA TRIIYGGS
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 326.25 bits (835), Expect = 9.416e-89
Identity = 161/212 (75.94%), Postives = 176/212 (83.02%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKFFVGGNWKCNGTT++V+KIV  LNEGQ                FL +VKS LR  FHVAAQNCWVKKGGAFTGE+SAEMLVNL +P VILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQREAGSTM+VVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGS
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.029e-87
Identity = 159/212 (75.00%), Postives = 176/212 (83.02%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKFFVGGNWKCNGT+EEVKKIV++LNE +                FL  VK+ LR  FHVAAQNCWVKKGGAFTGE+SAEMLVNL IP VILGHSERR +LNE NEFVGDK AYALSQGLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW+  N   ++A + RIIYGGS
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 320.472 bits (820), Expect = 5.167e-87
Identity = 159/212 (75.00%), Postives = 175/212 (82.55%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKFFVGGNWKCNGTT++V KIV +LNEGQ                FL +VKS LRP   VAAQNCWVKKGGAFTGE+SAEMLVNL IP VILGHSERR +L E NEFVGDKVAYALSQGLKVIACVGETLEQRE+GSTM+VVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKWL AN S E+A +TRIIYGGS
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 307.375 bits (786), Expect = 4.526e-83
Identity = 153/212 (72.17%), Postives = 169/212 (79.72%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKFFVGGNWKCNGT  +V+ IV+ LN GQ                FL  VK  LRP   VAAQNCWVKKGGAFTGE+SAEMLVNL IP VILGHSERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTMEVVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR WL  N SPE+A +TRIIYGGS
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 306.605 bits (784), Expect = 7.720e-83
Identity = 153/212 (72.17%), Postives = 168/212 (79.25%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKFFVGGNWKCNGT E+V+ IV  LN GQ                FL +VK+ LRP   VAAQNCWVKKGGAFTGE+SAEML NL +P VILGHSERR +L E +EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTMEVVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGS
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGS 212          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.082e-68
Identity = 127/151 (84.11%), Postives = 138/151 (91.39%), Query Frame = 1
Query:  220 VAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            VAAQNCWVKKGGAFTGE+SAEML NL +P VILGHSERR +LNE NEFVGDKVAYALSQGLKVIACVGETLEQREAG+TMEVVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW   N S E++A+TRIIYGGS
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGS 153          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.947e-66
Identity = 130/213 (61.03%), Postives = 146/213 (68.54%), Query Frame = 1
Query:   37 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            MGRKFFVGGNWKCNGT E V KIV  LNE                  FL    + L+    VAAQNCWVKKGGAFTGE+SA+ML NL I  VILGHSERR +L E NEFVG K AYA S+GL VIAC+GE LE+REAG T +V   Q K+ A      W N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGS
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGS 213          
BLAST of FC875456 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.788e-63
Identity = 122/209 (58.37%), Postives = 145/209 (69.38%), Query Frame = 1
Query:   46 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPRVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 672
            KFFVGGNWKCNGT E + K+VS LN                   ++  VKSSL     ++AQNCW+ KGGAFTGEIS E L +L    VILGHSERR ++ E NEF+G K AYAL+QG+ VIAC+GE LE+REAG T +V   Q KA AD + SW N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGS
Sbjct:   72 KFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPPFV--YIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGS 278          
The following BLAST results are available for this feature:
BLAST of FC875456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY2.241e-9077.36Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH5.520e-8977.36Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE9.416e-8975.94Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_COPJA3.029e-8775.00Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYSJ5.167e-8775.00Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE4.526e-8372.17Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU7.720e-8372.17Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA1.082e-6884.11Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP2.947e-6661.03Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL1.788e-6358.37Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionC31404B07EF CTVClemen1 Citrus clementina cDNA clone C31404B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875456 ID=FC875456; Name=FC875456; organism=Citrus clementina; type=EST; length=677bp
GAAATAAAACATAACACACACACGCACTCGTCGAAAATGGGCAGGAAGTT
CTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTGAAAA
AGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTT
GAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGAAGAGTTC
GTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGG
GAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGAA
ATTCCTAGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGA
ATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTT
TGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGA
TCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGT
CTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTG
GAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAA
CTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTGCAGCAAC
ACGGATCATCTACGGAGGATCCCGTAA
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