FC875460

Overview
NameFC875460
Unique NameFC875460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7178 contig Ccv1_Contig7178:841..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875460 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 69/177 (38.98%), Postives = 96/177 (54.24%), Query Frame = 2
Query:    2 DDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 529
            DDG+  L W+ S S          WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  158 DDGWAVLKWVNSSS----------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of FC875460 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 65/177 (36.72%), Postives = 93/177 (52.54%), Query Frame = 2
Query:    2 DDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 529
            DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  160 DDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of FC875460 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 60/165 (36.36%), Postives = 87/165 (52.73%), Query Frame = 2
Query:    2 DDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELL 496
            DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +  +   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL
Sbjct:  160 DDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312          
BLAST of FC875460 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 58/176 (32.95%), Postives = 86/176 (48.86%), Query Frame = 2
Query:    2 DDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 529
            DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D  +   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP    + GL     L+ V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  167 DDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
The following BLAST results are available for this feature:
BLAST of FC875460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH3.279e-2338.98Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.799e-2136.72Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH1.166e-2036.36Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ1.742e-1632.95Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionC31404B11EF CTVClemen1 Citrus clementina cDNA clone C31404B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875460 ID=FC875460; Name=FC875460; organism=Citrus clementina; type=EST; length=697bp
CGACGATGGTTTCGAAGCCCTCCTTTGGCTCCGGTCACTATCACTGGCTC
AGGCTCAGGCTCGGGAGAATAATTGGCTGACTGAACATGTGGATTTTCAA
CGCGTCTTCCTCATTGGAGACAGCTCCGGAGGGAACGTAGTGCATGAAGT
GGCGGCGCGTGCAGGTGACGCGGACTTGAGCCCGTTGCGTGTGGCCGGAG
CGATTCCGATTCATCCGGGTTTCCTCCGGCAGGAAAGGAGCAAGTCGGAG
TTGGAAAACCCGCAGTCACCTCTTCTGACTCTGGACATGGTGGACAAGTT
CTTGAGCTTTGCCCTGCCGTTGAACAGCGACAAGGGGCATCCGTACACCT
GTCCAATGGGGCCGGCTGCGTCGCCGATCGACGGTCTGAAGCTGCCTCCG
TTTCTGCTGTGCGTGGCGGGCAATGACTTGATTAAGGACACTGAGATGGA
ATATTATGAAGCCATGAAAAAGGCTGGAAAGGATGTGGAGTTGTTGGTGA
ATCCTGGAATGGGTCACAGTTTTTATCTCGACAAGATTGCAGTCGATATG
GACCCAAACACTGCTGCTCAAACTTGTAGTCTTTTTCAAGGAATAGCGGA
GTTTATGAGGAAGCACTGATCAATTATCAATTTTTTAATCCATAAATAGT
TGATTATCCGATTAATGGTGGGGTTTTTCTTAAGTACATTTGTCGTA
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