FC875653
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: GRSF1_MOUSE (G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15 Identity = 55/171 (32.16%), Postives = 78/171 (45.61%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFF 607 VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E + + SP + I K E AV G L +RGLPF A DI++FF Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFF 420
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: GRSF1_HUMAN (G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15 Identity = 54/173 (31.21%), Postives = 83/173 (47.98%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY------YKA-----------------------IANEVSDVRGGSPHRSIPRAK--------SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607 VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E YK + ++ + + I K + D G S++H + +RGLPF A DI++FF Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFF 421
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP2_RAT (Epithelial splicing regulatory protein 2 OS=Rattus norvegicus GN=Esrp2 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14 Identity = 51/136 (37.50%), Postives = 72/136 (52.94%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 604 VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K G + R S ++ ILRLRGLPFSAG D++DF Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPADVLDF 366
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13 Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R E + + S DSA + G +RLRGLPF K++I+ FF + + I + ++ Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD 146
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13 Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R E + + S DSA + G +RLRGLPF K++I+ FF + + I + ++ Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD 146
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP2_MOUSE (Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13 Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 604 VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K G + R S ++ ILRLRGLPFSAG D++ F Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGF 367
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP2_HUMAN (Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13 Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 604 VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K G + R S ++ ILRLRGLPFSAG D++ F Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGF 377
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12 Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R E + + S DSA + G +RLRGLPF K++I+ FF + + I + ++ Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD 146
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12 Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R E + + S DSA + G +RLRGLPF K++I+ FF + + I + ++ Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD 146
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12 Identity = 65/195 (33.33%), Postives = 91/195 (46.67%), Query Frame = 2 Query: 107 DQGPSFYGT-PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 643 + P F G P +S N + + P V + G+PF E DV EFFHGL D V +L H +NN G P AL+RNR M +RYVEV + +++ A I + S G H +++PR+KS K S + + L+GLPF A ++DFFK + EDSI+I Sbjct: 271 NMNPVFLGPLNPVNSIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462 The following BLAST results are available for this feature:
BLAST of FC875653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875653 ID=FC875653; Name=FC875653; organism=Citrus clementina; type=EST; length=653bpback to top |