FC876241

Overview
NameFC876241
Unique NameFC876241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:106..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 7.131e-91
Identity = 170/208 (81.73%), Postives = 179/208 (86.06%), Query Frame = 1
Query:  127 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            M + KS IAKDVTELIG TPLVYLNR+VDGCVAR+AAKLEMMEPCSSVKDRIGYSMI+DAE KGLI PGESVLIEPTSGNTGIGLAF+AAAKGYRLII MPASMSLERR +L AFGAELVLTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIW+     IDALVS            KYLKE NP IKLYGV
Sbjct:    1 MADAKSTIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDALVSGIGTGGTVTGAGKYLKEQNPNIKLYGV 208          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.942e-88
Identity = 163/208 (78.37%), Postives = 178/208 (85.58%), Query Frame = 1
Query:  127 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            MVEEK+ IAKDVTELIGKTPLVYLN + DGCVAR+AAKLE MEPCSSVKDRIG+SMI DAE+ GLI PGESVLIEPTSGNTGIGLAF+AAAKGY+LIITMPASMSLERR +L AFGAEL+LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPK+HYETTGPEIWK     ID  VS            KYLKE NP++KL G+
Sbjct:    1 MVEEKAFIAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGKIDIFVSGIGTGGTITGAGKYLKEQNPDVKLIGL 208          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.247e-87
Identity = 159/208 (76.44%), Postives = 175/208 (84.13%), Query Frame = 1
Query:  127 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            M  EK  IAKDVTELIG TPLVYLN +VDGCVAR+AAKLE MEPCSSVKDRIGYSMI DAEEKGLI+PGESVLIEPTSGNTG+GLAFMAAAKGY+LIITMP+SMSLERR++L  F +ELVLTDPA+GMKGA+ KAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWK     +DAL S            KYL+E NP +KLYGV
Sbjct:    1 MAGEKIGIAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSNGKVDALASGIGTGGTITGSGKYLREQNPNVKLYGV 208          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.222e-84
Identity = 155/203 (76.35%), Postives = 171/203 (84.24%), Query Frame = 1
Query:  142 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTGPEIWK     ID  VS            KYLKE NP +KLYGV
Sbjct:    3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGKIDGFVSGIGTGGTITGAGKYLKEQNPNVKLYGV 205          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.902e-84
Identity = 156/208 (75.00%), Postives = 172/208 (82.69%), Query Frame = 1
Query:  127 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            M E    IA DVT LIG TPLVYLN++VDGC A+IAAKLE+MEPCSSVKDRIGYSMI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGY+LI+TMPASMS+ERR++L AFGAELVLTDP  GMKGA+QKA+E+  K PNSY+LQQFENPANPKIHYETTGPEIWK     +D LVS            KYLKE NPEIK+YGV
Sbjct:    1 MAESGQSIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVDILVSGIGTGGTVTGTGKYLKEQNPEIKIYGV 208          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.103e-83
Identity = 152/201 (75.62%), Postives = 169/201 (84.08%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            IA DVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTGPEIWK     ID  +S            KYLKE NP +KLYGV
Sbjct:    7 IANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGKIDGFISGIGTGGTITGAGKYLKEQNPNVKLYGV 207          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 1.103e-83
Identity = 153/201 (76.12%), Postives = 170/201 (84.58%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            IAKDVTELIG TPLVYLNR+ DGCV R+AAKLE MEPCSSVKDRIGYSMI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP  GMKGAVQKAEE+  KT NS++LQQFENPANPKIHYETTGPEIWK     +D LVS            +YL+E NP+IK+YGV
Sbjct:    5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIWKGTGGKVDGLVSGIGTGGTITGAGRYLREQNPDIKIYGV 205          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.440e-83
Identity = 155/201 (77.11%), Postives = 168/201 (83.58%), Query Frame = 1
Query:  148 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            IAKDVTELIG TPLVYLN++ DGCV R+AAKLE MEPCSSVKDRIGYSMI DAEEKG I PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP  GMKGAVQKAEE+  KTPNSY+LQQFEN ANPKIHYETTGPEIWK     ID LVS            KYL+E NP IKLYGV
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWKGTGGKIDGLVSGIGTGGTITGTGKYLQEQNPNIKLYGV 209          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 3.209e-83
Identity = 156/208 (75.00%), Postives = 169/208 (81.25%), Query Frame = 1
Query:  127 MVEEKSVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            M E    IAKDVTELIG TPLVYLN++ DGCV R  AKLE MEPCSSVKDRIGYSMI DAEEKGLI PG SVLIEPTSGNTGIGLAFMAAAKGY+L +TMPASMS+ERR++L AFGAELVLTDP  GMKGAV+KAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWK     ID LVS            +YL+E NP +KLYGV
Sbjct:    1 MGEASPSIAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIWKATAGKIDGLVSGIGTGGTITGTGRYLREQNPNVKLYGV 208          
BLAST of FC876241 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 4.191e-83
Identity = 154/203 (75.86%), Postives = 169/203 (83.25%), Query Frame = 1
Query:  142 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKRHRW*IDALVSXXXXXXXXXXXXKYLKEHNPEIKLYGV 750
            S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTGPEIWK     ID  VS            KYLKE N  +KLYGV
Sbjct:    3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGV 205          
The following BLAST results are available for this feature:
BLAST of FC876241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_CITLA7.131e-9181.73Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SPIOL1.942e-8878.37Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_SOLTU6.247e-8776.44Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK1_BRAJU2.222e-8476.35Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK2_ORYSJ2.902e-8475.00Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK2_BRAJU1.103e-8375.62Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK1_ORYSJ1.103e-8376.12Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_WHEAT1.440e-8377.11Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK_MAIZE3.209e-8375.00Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK1_ARATH4.191e-8375.86Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]

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Properties
Property NameValue
Genbank descriptionC32002C02EF DevOvary1 Citrus clementina cDNA clone C32002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876241 ID=FC876241; Name=FC876241; organism=Citrus clementina; type=EST; length=752bp
GAATTATTATCAGGAGATTTATTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAATGGTGGAGGAGAAGTCCGTGATT
GCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCAA
CCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATGA
TGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGCT
GATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTGA
GCCTACCAGCGGTAATACTGGCATAGGGTTGGCATTCATGGCAGCTGCTA
AGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAGA
AGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTGC
CAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAGA
CACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAAG
ATCCACTACGAGACTACCGGACCAGAGATCTGGAAAAGGCACCGGTGGTA
GATTGATGCCCTTGTTTCTGGTATAGGGACTGGTGGTACTGTCACTGGTG
CAGGGAAGTATCTCAAAGAGCATAATCCTGAAATTAAGCTCTATGGCGTT
GA
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