FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ARATH (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 3.895e-47 Identity = 97/163 (59.51%), Postives = 111/163 (68.10%), Query Frame = 1 Query: 178 MAITTTRSLSVTPVTRRSATPINXXXXXXXXXXXXXXXXXNLTLKVPSFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 M I ++SV P +RR + + K PS RVSA++ E S SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQA KLCDRNFG+GADGVIFAM GVN TDY MRIFNSDGSEPEMCGNG RCFARFIA Sbjct: 1 MEIAAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGFFEK-EYCFKSPSLRVSAAASMDAVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIA 162
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSJ (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPF PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.445e-41 Identity = 82/118 (69.49%), Postives = 96/118 (81.36%), Query Frame = 1 Query: 316 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 P+ R ++M+ + P SA+ +FL+RRES LHFVKY GLGNDFI+VDNR+S P++TPE+A KLCDRNFG+GADGVIF M GVN DYTMRIFNSDGSEPEMCGNG RCFARFIA Sbjct: 38 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIA 154
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSI (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica GN=DAPF PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41 Identity = 81/118 (68.64%), Postives = 96/118 (81.36%), Query Frame = 1 Query: 316 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 P+ R ++M+ + P SA+ +FL+RRES LHFVKY GLGNDFI++DNR+S P++TPE+A KLCDRNFG+GADGVIF M GVN DYTMRIFNSDGSEPEMCGNG RCFARFIA Sbjct: 41 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIA 157
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNY3 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803) GN=dapF PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.300e-34 Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 L F KYHGLGNDFILVDNR STEP +TP+QA++LCDR+FGIGADGVIFA+ G TDYTMRIFNSDGSEPEMCGNG RC A+F+A Sbjct: 3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTMRIFNSDGSEPEMCGNGIRCLAKFLA 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP6 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapF PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.697e-34 Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+ G D+DY MRIFNSDGSEPEMCGNG RC A+F++ Sbjct: 3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLS 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNE7 (Diaminopimelate epimerase OS=Synechococcus elongatus (strain PCC 7942) GN=dapF PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.697e-34 Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+ G D+DY MRIFNSDGSEPEMCGNG RC A+F++ Sbjct: 3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLS 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_TRIEI (Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) GN=dapF PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.217e-34 Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 418 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 F KYHGLGNDFIL+DNR+ +P +TPEQA +LCDRNFGIGADGVIFA+ GV TDYTMRIFNSDGSEPEMCGNG RC A+FIA Sbjct: 5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIRCLAKFIA 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NOSP7 (Diaminopimelate epimerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapF PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.451e-33 Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 + F KYHGLGNDFIL+DNR+S+ P +TPEQA +LCDR+FGIGADGVIFA+ G N TDYTMRIFNSDGSEPEMCGNG RC A F+A Sbjct: 3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAGFLA 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF2_ANASP (Diaminopimelate epimerase 2 OS=Anabaena sp. (strain PCC 7120) GN=dapF2 PE=3 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 5.460e-33 Identity = 64/85 (75.29%), Postives = 72/85 (84.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 + F KYHGLGNDFIL+DNR S P ITPE+A ++CDR+FGIGADGVIFA+ G N TDYTMRIFNSDGSEPEMCGNG RC A F+A Sbjct: 3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAAFLA 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP7 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7424) GN=dapF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32 Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 + F KYHGLGNDFIL+DNR+ +EP ++PE A ++CDR+FGIGADGVIF + G + TDY MRIFNSDGSEPEMCGNG RC A+FIA Sbjct: 3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTSQTDYQMRIFNSDGSEPEMCGNGIRCLAQFIA 87 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |