FC878134
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17 Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = -2 Query: 346 DSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPED--XXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNILMPSN 672 +S V+ F+YH P+TSIEW P+E S + VSS+D+Q+TIWD LE+D E EF T N +D QGQ D+KE HW QIP + + T DGFNI SN Sbjct: 375 NSPVSDFKYHTGPITSIEWNPYEESQVIVSSSDDQVTIWDFSLEEDTE---EF---TNANANPDDDFQYPPQLFFIHQGQHDIKEVHWHPQIPHVAISTSIDGFNIFKSSN 479
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: RRB1_SCHPO (Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe GN=rrb1 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15 Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = -2 Query: 361 RLLKGGDSV---VAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690 R LK SV VA F++H+ P+ SIEW P+E S + V ADNQ+++WDL +E D E + +D GQ+++KE HW QIPG IV T G N+ Sbjct: 368 RSLKSSSSVATPVASFKWHRAPIYSIEWHPNEDSVIGVVGADNQISLWDLSVELDEE------EQDSRAAEGLQDVPPQLMFIHMGQQEIKEMHWHRQIPGTIVSTAMTGINV 474
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14 Identity = 46/110 (41.82%), Postives = 56/110 (50.91%), Query Frame = -2 Query: 361 RLLKGGDSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690 R K G S VA F+ H PVTS+EW P + A S ADNQ+T WDL +E+D E G E D QG+ DLKE HW Q PG++V T GF + Sbjct: 338 RQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPEAG------DAETDPGLADLPQQLLFVHQGETDLKELHWHPQCPGVLVSTALSGFTV 440
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14 Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = -2 Query: 361 RLLKGGDSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690 R K G S VA F+ H PVTS+EW P + A S ADNQ+T WDL +E+D E G + +T + A QG+ DLKE HW Q PG+++ T GF + Sbjct: 337 RQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESG---ETETDPGLAA---LPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTV 439
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14 Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = -2 Query: 361 RLLKGGDSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690 R K G S VA F+ H PVTS+EW P + A S ADNQ+T WDL +E+D E G + +T + A QG+ DLKE HW Q PG+++ T GF + Sbjct: 338 RQFKSG-SPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPEPG---ETETDPGLAA---LPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTV 440
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13 Identity = 45/110 (40.91%), Postives = 56/110 (50.91%), Query Frame = -2 Query: 361 RLLKGGDSVVAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 690 R K G S VA F+ H PVTS+EW P + A S AD+Q+T WDL +E+D E G E D QG+ +LKE HW Q PG++V T GF I Sbjct: 338 RQFKSG-SPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVERDPEAG------DVEADPGLADLPQQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTI 440
BLAST of FC878134 vs. ExPASy Swiss-Prot
Match: RRB1_YEAST (Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae GN=RRB1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12 Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = -2 Query: 361 VAHFEYHKHPVTSIEWGPHEGSTLAVSSADNQLTIWDLFLEKDGEGGAEFKVKTREQVNAPEDXXXXXXXXXQGQKDLKEFHWPAQIPGMIVFTPADGFNI 663 VA +++HK +TSI + P + S +AV S DN +T+WDL +E D E + +T+E P QK++K+ W QIPG +V T DG N+ Sbjct: 410 VAQYDFHKGAITSIAFNPLDESIVAVGSEDNTVTLWDLSVEADDEEIKQQAAETKELQEIPPQLLFVHW-----QKEVKDVKWHKQIPGCLVSTGTDGLNV 505 The following BLAST results are available for this feature:
BLAST of FC878134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878134 ID=FC878134; Name=FC878134; organism=Citrus clementina; type=EST; length=691bpback to top |