FC878135

Overview
NameFC878135
Unique NameFC878135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13873 contig Ccv1_Contig13873:64..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878135 vs. ExPASy Swiss-Prot
Match: PGES2_DANRE (Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.463e-38
Identity = 85/196 (43.37%), Postives = 114/196 (58.16%), Query Frame = 1
Query:  292 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGE-QMVDSSDIM--------------------------------------DKLFQRIH------LDNASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYISTQGNFSFTEKLVAKYVGAAAMYFVSKKLKKRHNI 744
            + LYQY+ CPFC+KV+AFLDY+R+PY++VEVNP+ ++EIKWS Y+KVPIL V+G  Q+ DSS I+                                      +K +  +H      L        EE KWR W D+ LVH++SPN+YRT +EAL SFDYI  +G F   E   AKY GAAAM+ +SK+LK +HN+
Sbjct:  107 LTLYQYKTCPFCSKVRAFLDYHRLPYEIVEVNPVMRQEIKWSTYRKVPILMVNGTVQLNDSSVIISALKTYISSKDKKISEILACYPEMKSKNDRGKDVIEFGNKYWVMVHDADADQLYPGKDSRKEEIKWRTWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGSFEGFFAKYFGAAAMWIISKRLKYKHNL 302          
BLAST of FC878135 vs. ExPASy Swiss-Prot
Match: PGES2_MOUSE (Prostaglandin E synthase 2 OS=Mus musculus GN=Ptges2 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37
Identity = 89/217 (41.01%), Postives = 120/217 (55.30%), Query Frame = 1
Query:  244 AKPQAKEQPRSEKFGDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDG----EQMVDSSDIMDKLFQRI-----------------------------------HLDNASSQS--------DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYISTQGNFSFTEKLVAKYVGAAAMYFVSKKLKKRHNITDE 753
            A+  A + P S     + LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL        +Q+ DSS I+  L   +                                    LD   +Q          EE KWR W D+ LVH++SPN+YRT +EAL SFDYI  +G F   E  +AKYVGAAAMY +SK+LK RH++ D+
Sbjct:   86 AERSAAQLPLSNSL-QLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTEIKFSSYRKVPILVAQEGDSLQQLNDSSVIISALKTYLVSGQPLEEVITYYPPMKAMNDQGKEVTEFCNKYWPMLDEKEAQQMYGGKEARTEEMKWRQWADDWLVHLISPNVYRTPAEALASFDYIVREGKFGAVEAAMAKYVGAAAMYLISKRLKSRHHLQDD 301          
BLAST of FC878135 vs. ExPASy Swiss-Prot
Match: PGES2_MACFA (Prostaglandin E synthase 2 OS=Macaca fascicularis GN=PTGES2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 83/202 (41.09%), Postives = 113/202 (55.94%), Query Frame = 1
Query:  292 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVD----GEQMVDSSDIM---------------------------------------------DKLFQRIHLDNASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYISTQGNFSFTEKLVAKYVGAAAMYFVSKKLKKRHNITD 750
            + LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL        +Q+ DSS I+                                             +K  Q+++  +      EE KWR W D+ LVH++SPN+YRT +EAL SFDYI  +G F   E  VAKY+GAAAMY +SK+LK RH + D
Sbjct:  102 LTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNDQGKEVTEFGNKYWLMLNEKEAQQVY--SGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQD 301          
BLAST of FC878135 vs. ExPASy Swiss-Prot
Match: PGES2_HUMAN (Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGES2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 84/200 (42.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:  292 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVD----GEQMVDSSDIMDKLFQRI-----------------------------------HLDNASSQS--------DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYISTQGNFSFTEKLVAKYVGAAAMYFVSKKLKKRHNITD 750
            + LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL        +Q+ DSS I+  L   +                                    L+   +Q          EE KWR W D+ LVH++SPN+YRT +EAL SFDYI  +G F   E  VAKY+GAAAMY +SK+LK RH + D
Sbjct:  102 LTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQD 301          
The following BLAST results are available for this feature:
BLAST of FC878135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PGES2_DANRE1.463e-3843.37Prostaglandin E synthase 2 OS=Danio rerio GN=ptges... [more]
PGES2_MOUSE1.239e-3741.01Prostaglandin E synthase 2 OS=Mus musculus GN=Ptge... [more]
PGES2_MACFA1.789e-3641.09Prostaglandin E synthase 2 OS=Macaca fascicularis ... [more]
PGES2_HUMAN1.789e-3642.00Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGE... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AE07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878135 ID=FC878135; Name=FC878135; organism=Citrus clementina; type=EST; length=766bp
ATTTTGGCAACGATGAGGAGACTTAACCGACTCGCCACCCTTAGCCGAAC
CGTTTCTAGCGGCGCCACCTCAGCAGCCACTCAACATCGTCATTATCAGC
TGGCTCAACCGGCGGCTCTCTTCAGCACATTCTCATCTTGTCAATCTCAA
GGTTTGGCGCAAAAGATCGTCGATCGGCTTGGTCCGTCTTTTGCTGGCGG
AGTTGCGGGGTTCTCTGCGGCTGCCCCTTCACTAGCTCAAGACGCTAAGC
CTCAGGCTAAGGAGCAGCCTCGGTCTGAGAAGTTTGGCGACGTCGTTCTC
TATCAGTATGAAGCTTGTCCTTTCTGCAACAAAGTTAAAGCATTTTTGGA
TTATTATAGGATTCCTTACAAAGTTGTGGAGGTCAATCCTATCAGCAAAA
AAGAGATTAAGTGGTCTGATTATAAGAAGGTGCCCATACTGAAGGTTGAT
GGTGAACAGATGGTGGATTCCTCAGATATAATGGATAAGCTGTTCCAAAG
GATTCATCTTGACAATGCTTCCTCTCAAAGCGATGAGGAGAAGAAGTGGC
GTGCGTGGGTGGATAATCACTTGGTGCATGTTTTGTCTCCGAACATATAT
CGAACCACTTCTGAAGCACTTGAGTCATTTGACTATATCTCCACTCAAGG
CAACTTCAGTTTCACTGAGAAGTTAGTGGCGAAGTATGTTGGAGCAGCTG
CAATGTATTTTGTGTCTAAGAAACTGAAGAAGAGACACAATATCACTGAT
GAACGAGCGTCATTGT
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