FC878149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_ARATH (DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1) HSP 1 Score: 542.347 bits (1396), Expect = 1.297e-153 Identity = 270/292 (92.47%), Postives = 286/292 (97.95%), Query Frame = 1 Query: 1 REFTDLSLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM 876 RE DLSLS+VQ+ IET+I+QIARSILAG+GFSF VPSRA+SNQLYVPELDRIVLKDK+TLRPFAS+S+VRK+TIT +IL+LIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDV+C+LGCTRSSLNVIAAEKGVVVGRL FSDNGDMIDCTKMGMGGKAIPPNIDRVGDM+SDAMFILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM Sbjct: 71 REVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVPELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM 362
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: SPO11_HUMAN (Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 5.799e-53 Identity = 106/290 (36.55%), Postives = 184/290 (63.45%), Query Frame = 1 Query: 19 SLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLS--TVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM 876 S S V ++IE +I I S+ +F + +R+S + + + + T R S S + +K ++ +KILS+I++L N + TKRD++YTD +LF +QT D +++D++C+L +R SL++++ KG++ G L + ++G ++CT G A+P NI + ++ +DA F+L+VEKDA + RL +D F N+ PCI++T KG PD+ TRL ++K+ +PV LVD+DP+G++I+ +Y GS +MS+++ +LT P I+WLG+ PSDL + +P+ +P+ Sbjct: 43 SSSEVLASIENIIQDIITSLARNEAPAFTIDNRSSWENIKFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLKVSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCT-CGATAVAVPSNIQGIRNLVTDAKFVLIVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPHGIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPL 331
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: SPO11_MOUSE (Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=2 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 2.204e-52 Identity = 108/290 (37.24%), Postives = 180/290 (62.07%), Query Frame = 1 Query: 19 SLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLS--TVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM 876 S S V + IE +I I +S+ +F + +R+S + + + + + T R S S +V+K + +K+LS+I++L + + TKRD++YTD +LF +Q D+ +DD++C+L R SL+V++ KG++ G L + ++G + CT A+P NI + + +DA F+L+VEKDA + RL +D F +R PCI+VT KG PD+ TRL ++K+ +PV LVD+DPYG++I+ +Y GS +MS+++ NLT P I+WLG+ PSD+ + IP+ +P+ Sbjct: 43 SSSEVLTAIENIIQDIIKSLARNEVPAFTIDNRSSWENIMFDDSVGLRMIPQCTTRKIRSDSPKSVKKFALILKVLSMIYKLIQSDTYATKRDIYYTDSQLFGNQAAVDSAIDDISCMLKVPRRSLHVLSTSKGLIAGNLRYMEEDGTRVQCT-CSATATAVPTNIQGMQHLITDAKFLLIVEKDATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVFTLVDADPYGIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPL 331
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: SPO11_ARATH (Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.450e-45 Identity = 102/294 (34.69%), Postives = 162/294 (55.10%), Query Frame = 1 Query: 4 EFTDLSLSAVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKS---TITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM 876 E T+L L ++ +++++ +A G S ++ N PE D + DK + +L ++ + +++L ++ QL N H +KRD++Y F+ Q+ D + D+ + C+R +LNV++ G+V+G L F + G DC +P ++ V D+ S A +IL+VEK+ + RLA D F CI++T +G PDV+TR FLR + +L LPV LVD DPYG +IL+ Y GS M+YD +L PD+KWLG PSD + Y +P+QC LP+ Sbjct: 9 ESTNL-LQRIKDFTQSVVVDLAE------GRSPKISINQFRNYCMNPEADCLCSSDKPKGQEIFTLKKEPQTYRIDMLLRVLLIVQQLLQENRHASKRDIYYMHPSAFKAQSIVDRAIGDICILFQCSRYNLNVVSVGNGLVMGWLKFREAGRKFDCLNSLNTAYPVPVLVEEVEDIVSLAEYILVVEKETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRFLRLLMEKLHLPVHCLVDCDPYGFEILATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPL 295
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_AERPE (Type II DNA topoisomerase VI subunit A OS=Aeropyrum pernix GN=top6A PE=3 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 1.691e-44 Identity = 96/278 (34.53%), Postives = 156/278 (56.12%), Query Frame = 1 Query: 61 QIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYT---------------DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYK 849 ++ ++ G ++P R SN ++ PE +V+ ++ R F ++ R+ T+ + S+I+Q + N + T RDL+Y + + +Q +SD+V+ D+ G R + +++ EKG VVG + GD+ID +K+G G AI P D + + DA F+L+VEKDA + +L F+ ++ ++VT GQPD ATR F+R++ ELKLPV + DSDPYG I SVY GS +SY+S L TP K+LG++ +D+ Y+ Sbjct: 28 RLISDVIKGRPPKLEIPKRTLSNTIFDPERGILVIGEEKLEREFLNVGESRRFMQTLLMASIIYQSLIENEYPTIRDLYYKGKHTIVYRDYSGRKREENTWDEQKESDSVIQDIEVYTGLFREDMLILSKEKGKVVGNMRIRSGGDVIDLSKLGHGAYAIEPTPDLIEFLDVDAEFVLVVEKDAVFQQLHRAGFWKKYKALLVTGSGQPDRATRRFVRRLHEELKLPVYIITDSDPYGWYIYSVYKVGSITLSYESERLATPKAKFLGVQMTDIFGYR 305
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_SULSH (Type II DNA topoisomerase VI subunit A OS=Sulfolobus shibatae GN=top6A PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.750e-41 Identity = 94/277 (33.94%), Postives = 150/277 (54.15%), Query Frame = 1 Query: 58 LQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFY-----------------TDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDL 837 L + + G ++P R SN +Y + ++L +K R F L+ ++ TV + S+I+ + + + T RDL+Y ++ + +Q +SD+V+ D+ R + +++ EKG VVG L D+ID +K G G AI P D + + DA F+L+VEKDA + +L F+ ++ I++T+ GQPD ATR F+R++ ELKLPV L D+DPYG I SV+ GS ++SY+S L TPD K+LG+ D+ Sbjct: 26 LNLVEQLKKGEPLVMEIPMRTLSNAIYDEKRKLLLLGEKKLRRNFLDLNEAKRFMQTVLMASIIYDALVSDEYPTIRDLYYRGKHSLLLKSIEGNKIVSEENTWDEQKESDSVIVDIEVFTSLLREEMLILSKEKGKVVGNLRIRSGNDVIDLSKTGHGAYAIEPTPDLIDFIDVDAEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIFSVFRIGSISLSYESERLATPDAKFLGVSMGDI 302
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_HYPBU (Type 2 DNA topoisomerase 6 subunit A OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=top6A PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 5.092e-41 Identity = 94/278 (33.81%), Postives = 151/278 (54.32%), Query Frame = 1 Query: 61 QIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYT---------------DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYK 849 +I ++ G + +P R SN +Y + ++L + R F L +K T+ + +I++ RN + T RDL+Y + + +Q +SDAV+ D+ G R + +++ EKG VVG + GD+ID +KMG G AI P D + + DA ++L+VEKDA + +L F+ + I++T+ GQPD ATR F+R++ EL LPV L D+DPYG I SV+ GS +SY+S L TP+ +++G+ +D+ YK Sbjct: 27 EILEQVMRGENPTIMLPKRTLSNTIYDEKRKLLLLGPEKLKRSFFDLHESKKFMQTLLMARIIYEALERNEYPTIRDLYYRGKHTIVYREPGGRRHEENTWDEQRESDAVIRDIEVFTGLLREEMLILSKEKGKVVGNMRIRSGGDIIDLSKMGHGAYAIEPTPDLIEFIDVDAEYVLVVEKDAVFQQLHRIGFWKKHRAILITSAGQPDRATRRFVRRLNEELGLPVYILTDADPYGWYIYSVFKIGSITLSYESERLATPNARFIGVSMTDIFGYK 304
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_SULTO (Type II DNA topoisomerase VI subunit A OS=Sulfolobus tokodaii GN=top6A PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.794e-39 Identity = 90/281 (32.03%), Postives = 154/281 (54.80%), Query Frame = 1 Query: 40 TIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYT---------------DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDL 837 T+ + +++ I + ++P R N +Y + ++L ++ R F L+ ++ TV + S+I+ + + + T RDL+Y + + +Q +SD+V+ D+ R + +++ EKG VVG + D+ID +KMG G +I P D + + +A F+L+VEKDA + +L F+ ++ I+VT+ GQPD ATR F+R++ ELKLPV L D+DPYG I SV+ GS ++SY+S L TP+ K+LG+ +D+ Sbjct: 20 TLRQVFVKLIEQINNSEPPTMEIPKRTLGNTIYDEKRKLLLLGEEKLKRSFFDLNESKRFMQTVLMASIIYDALINDEYPTIRDLYYRGKHSIILKDPRGKTYEENTWDEQKESDSVIMDIEVFTSLLREDMLILSKEKGKVVGDMRIRSGNDIIDLSKMGHGAYSIEPTPDLIDFVDINAEFVLVVEKDAVFQQLHRAGFWKQYKAILVTSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIYSVFRIGSISLSYESERLATPNAKFLGVSMTDI 300
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: SPO12_ARATH (Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana GN=SPO11-2 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.695e-36 Identity = 89/263 (33.84%), Postives = 146/263 (55.51%), Query Frame = 1 Query: 112 SRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYT----DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNG-DMIDCTKMGMGGKAIPPNIDRVGD--MKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMEL-KLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM 876 S + N+ + ++ I L T + T + K++ + Q+ L+ VT+R+LFY F Q + + + DV +L C+R SL ++A+ +G+V GRL + G + +DC+ G G AI +++ + + M++DA +I++VEK A + RL EDR +N PC+ +TAKG PD+ATR FL +M LP+L LVD +P GL IL + GS M ++ ++KW+G+R DL+ IPE+ +P+ Sbjct: 62 SNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVTQRELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQEPGKEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPCVFITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRYAC-NVKWIGLRGDDLN--LIPEESLVPL 321
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_PYRAB (Type II DNA topoisomerase VI subunit A OS=Pyrococcus abyssi GN=top6A PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.099e-35 Identity = 83/282 (29.43%), Postives = 147/282 (52.13%), Query Frame = 1 Query: 31 VQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFY--------TDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKI 852 V +E L +I + +G F VP+R +N + E I L DK + R F +++ RK T T+ +++ I +L H + R+ +Y T F+DQ++SD +++D+ +LG R +++ A +G + G + D D + +K+G GG A+P ++ + + + ++L+VE A RL E+++ + C+IV +GQ R + ++ E LP++ D DPYG I S GS N++Y S L TPD K++G+ D+ +Y + Sbjct: 19 VLKKLEDLAWKILEEVKSGKNPYFDVPTRGLNNVYFDEEARLIKLGDKLSRRYFLNVAHARKFTQTLILMAYIKRLVSEGKHASLREAYYANKHTIPGTRENTFEDQSESDPIIEDLERMLGVLREEMHITADRRGYIYGDIVIKDGEDEFNASKLGTGGWAVPGTVEHIQFPEVNVDYVLVVETAAMADRLIEEKYPKKENCLIVATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYSTIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYNL 300 The following BLAST results are available for this feature:
BLAST of FC878149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878149 ID=FC878149; Name=FC878149; organism=Citrus clementina; type=EST; length=877bpback to top |