FC878403
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2) HSP 1 Score: 201.445 bits (511), Expect = 5.582e-51 Identity = 116/239 (48.54%), Postives = 144/239 (60.25%), Query Frame = 1 Query: 130 DHGVVNFLFLFLYLHA----LPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKRPPRSRSIGW 831 DHG + L LFL L + +V Q D S +F+ TMAI+ ++LVSVFF LGFFSVYIR+C ER G +R+ ARGLD S+I TFPTF YS V+ L+IGK +LEC+VCLNEF D+ETLRLIPKC HVFH CIDAWL +H TCP+CRA+L+P PGE+ S IP L D S + D I+ + S D + + A + NQ P RS S GW Sbjct: 18 DHGSILQLLLFLLLLSSHGGFKFVAGQATHGGSDV-SGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGS--DPNGDRIRSLGSPDARLIESVA---LTCNQSMPRRSMSTGW 250
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.511e-43 Identity = 100/210 (47.62%), Postives = 129/210 (61.43%), Query Frame = 1 Query: 244 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQE--ISSTDVQRRDEEAPDVILTNQKRPPRSRSIGWRRPSGWFPVHTP 867 F+ T AI+ ++LVSVFF LG SVY+R+C + D+ +N R GLD SVI TFPTF YS V+ L+IGK +LEC VCLNEF D+ETLRLIP+C HVFH CIDAWL + TCP+CRANLVP PGE+ SS IP L + G + L D+ ++ ++S D + D A NQ P +S S GW+ + P +P Sbjct: 35 FSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGM-DSGGGPGNWLNVRQTTEP-GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLRTPIDDNRKRVLTSPDERLIDSVA---WTGNQSMPRKSMSTGWKLAELYSPASSP 239
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 6.839e-41 Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = 1 Query: 241 KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPS 663 + + MA++ VIL++ F +GFFS+Y R C+ PDA + GG R+ ARGLD SV+ TFPTFLYS V+ K+GKG LECA+CLNEF D+ETLRL+PKC HVFH CIDAWL AH TCPVCRANL Q E S Sbjct: 44 RLSPAMAVIVVILIAALFFMGFFSIYFRHCS----GVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGES 182
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 5.419e-38 Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 1 Query: 217 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRG--ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 654 D ++ +G + MA+V V++++ F +GFF+VYIR CT + D T GG +R ARGLD I TFPTF+YS V+ KIGKG+LECA+CLNEF D+ETLRL+PKC HVFH CI AWL H TCPVCR NL Q E Sbjct: 33 DPYAYSG-SLSPAMAVVVVVVIAALFFMGFFTVYIRHCT----GAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPE 175
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.991e-37 Identity = 91/214 (42.52%), Postives = 118/214 (55.14%), Query Frame = 1 Query: 262 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA--TIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVIL---------TNQKRPPRSRSIG---WRRPSGWFP 855 + VI+ + F L F + C + SP + T GG + + RR +RGL VIN+FP+FLYS V+ LKIGKG +ECA+CLNEF DEETLRL+P CSH FH CID WLS+ +TCPVCRA+L P+PG +S P + P + ++ + +R E+PDV L T PPRSRS G WR FP Sbjct: 45 VPAVIIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPH---------DNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTPPRSRSTGLSNWRITELLFP 249
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36 Identity = 97/243 (39.92%), Postives = 127/243 (52.26%), Query Frame = 1 Query: 148 FLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQ--RSRR-GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKRPPRSRSIG---WRRPSGWFP 855 FL L L L ++PY QT T K N + +V +L V F + F S++ R+ + S +T +Q R RR ARGLD I TFPTFLYS V+ ++IGKG +ECAVCL EF D+ETLRL+P C HVFH DC+D WLS H+TCP+CRA+LV Q G+ S D G+ + + S+D D V +N PRS+S G W+ FP Sbjct: 18 FLLLLLLLQSVPYGFGQTQTTPP---GTTKTKPNDPVVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDA----VTWSNSNITPRSKSTGLSSWQITGILFP 253
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34 Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 1 Query: 136 GVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR--SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQ 714 GV+ LFLF H LPYVT Q ++ T + +I+ ++++++F LG S + R IG Q R RGL+ VI +FPTFLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCPVCRANL +PGE+ P LN DV + +++ Sbjct: 15 GVILPLFLF---HLLPYVTCQQESVPTNSIRQTNLSAD---SIIAIVVLAIFISLGMVSCCLHCIFYREE---------IGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGES----YPYLNMDVETGGVQK 190
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.293e-31 Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 1 Query: 265 VTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGI--NQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP---QPGE 654 V +LV++FF+ G SVYIR C R++PD+ + SRRG GLD++V+ +FP F YS+V+E KIG LECA+CLNE D ET+RL+P C+H+FH+DCID WL +H TCPVCR+NL +PG+ Sbjct: 48 VFAVLVTLFFLTGLLSVYIRHCA---RSNPDSSTRYFRNRANDGSSRRG--GLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGD 177
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.761e-31 Identity = 79/191 (41.36%), Postives = 108/191 (56.54%), Query Frame = 1 Query: 253 TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR-SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKRPPRSRS 822 T+ ++T+IL ++F I+G SV R + + + + R S RGLD+++IN+FPTFLYS V+E +IG G +ECAVC+ EF D ETLRL+P+C HVFH DC+ WLS H+TCP+CR +L QPGE LNP+ + ST+ D V TN+ RP RS S Sbjct: 14 TLLVITIILFAIF-IVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGER-----SYLNPEP------------DLVESTNSHLFD----GVTWTNRNRPSRSWS 182
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 6.416e-31 Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 1 Query: 157 LFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGR---NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGS 720 LFL +H LPYVT Q D T T ++ +I++++F L + ++ + R S + F + R RGL+ ++ +FP FLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCP CRANL +PGE S P+ + + G+ + ++ S Sbjct: 20 LFL-VHLLPYVTCQQESESVDRNRKTNFP---TETVIAIIVLAIFISLSMVACFLHKTFYRAEVEAASQEVFHS----------RARRGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGE--SYPYPITDLETGNEQRDEHS 194 The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bpback to top |